Add citation

README.md

@@ -2,6 +2,25 @@
 
 > AlphaPulldown fully **maintains backward compatibility** with input files and scripts from versions 1.x.
 
+## How to Cite
+
+If AlphaPulldown contributed significantly to your research, please cite the corresponding publication in *Bioinformatics*:
+
+```bibtex
+@article{Molodenskiy2025AlphaPulldown2,
+  author    = {Molodenskiy, Dmitry and Maurer, Valentin J. and Yu, Dingquan and Chojnowski, Grzegorz and Bienert, Stefan and Tauriello, Gerardo and Gilep, Konstantin and Schwede, Torsten and Kosinski, Jan},
+  title     = {AlphaPulldown2—a general pipeline for high-throughput structural modeling},
+  journal   = {Bioinformatics},
+  volume    = {41},
+  number    = {3},
+  pages     = {btaf115},
+  year      = {2025},
+  doi       = {10.1093/bioinformatics/btaf115}
+}
+```
+
+---
+
 ## Table of Contents
 
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