Commit Graph

15 Commits

Author SHA1 Message Date
Dima
f0e12dc659 Install modelcif for pulldown.dockerfile 2024-07-23 11:08:13 +02:00
Dingquan Yu
baed41fa26 Update pulldown.dockerfile
switched the installation order
2024-07-02 14:35:21 +02:00
maurerv
4c9ef32876 Moved to classic solver 2024-06-14 13:40:12 +02:00
maurerv
f78da683ab Moved to classic solver 2024-06-14 11:30:53 +02:00
Dingquan Yu
30bfc6d283 Update pulldown.dockerfile 2024-06-12 13:50:34 +02:00
Dingquan Yu
2c42567b2f Update pulldown.dockerfile 2024-06-12 13:43:38 +02:00
Dingquan Yu
7a5ad14e69 Update pulldown.dockerfile 2024-06-12 13:37:50 +02:00
Dingquan Yu
9cf1ccf0b6 Update pulldown.dockerfile 2024-06-12 13:32:42 +02:00
Dingquan Yu
4e9e28d016 Update pulldown.dockerfile 2024-06-12 13:25:10 +02:00
Dingquan Yu
cbe103f2cf Added -y to the apt installations 2024-06-12 13:11:15 +02:00
Dingquan Yu
6a91303822 Update pulldown.dockerfile 2024-06-12 13:02:05 +02:00
Dingquan Yu
a8006a9648 Update pulldown.dockerfile 2024-06-12 12:51:28 +02:00
Dingquan Yu
29bb486ea2 Update pulldown.dockerfile 2024-06-12 12:11:36 +02:00
maurerv
91e276a182 Updated container creation to distinguish between push and release events. AlphaPulldown source code will now be pulled from the main branch upon container creation and not from PyPi 2024-06-10 09:45:09 +02:00
Dima
67b89f94f9 Snakemake docker (#317)
* Copied from https://github.com/maurerv/alphaabriss

* CI/CD

* Restructured snakemake workflow topology. Updated Dockerfile to compatible jax cuda versions. Included analysis container in CI/CD

* Run container build in parallel

* Free container space for analysis image

* Updated container paths in Snakefile

* Moved snakemake pipeline to kosinskilab/AlphaPulldownSnakemake

* Added tag for container from the release. Add test_feats_with_templates

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Co-authored-by: maurerv <valentin.maurer@embl-hamburg.de>
2024-04-25 11:18:14 +02:00