[pytest]
log_cli = true
log_level = INFO
log_format = %(asctime)s [%(levelname)8s] %(name)s: %(message)s
log_date_format = %Y-%m-%d %H:%M:%S
testpaths =
   test/unit
   test/integration
   test/functional
python_files = test_*.py
norecursedirs = 
   test/outdated
   alphafold
   alphafold3
   ColabFold
   AlphaLink2
   build
   __pycache__
markers =
   unit: fast unit tests for pure helpers and small mocked components.
   integration: CPU-only integration tests for filesystem, CLI, and module wiring.
   functional: deterministic package-level tests that are heavier than unit/integration.
   cluster: tests and utilities intended for Slurm or cluster execution.
   gpu: tests that require a GPU.
   slow: tests that are intentionally slow.
   external_tools: tests that rely on optional external tools or heavyweight dependencies.
   network: tests that require network access.
addopts = -ra --strict-markers -m "not cluster and not gpu and not network and not external_tools"