Dima f16189bcd8 Fix AF3 viewer annotation tables for duplicate residues

2026-03-26 11:48:24 +01:00

..

alphalink

Multiple fixes for AlphaLink2 backend (#531)

2025-08-07 15:20:03 +02:00

outdated

Rename alphafold backend to alphafold2

2025-11-13 13:16:35 +01:00

test/test_data/predictions/alphalink_backend/test__monomer_no_xl/TEST

Multiple fixes for AlphaLink2 backend (#531)

2025-08-07 15:20:03 +02:00

test_data

use tiny monomers

2026-03-19 15:03:14 +01:00

__init__.py

added unittest codes

2023-03-14 13:46:08 +01:00

.coverage

AF3 templates: fix mmCIF parsing by removing synthetic _entity_poly_seq and mapping only present residues

2025-08-12 14:04:33 +02:00

check_af3_with_af2_features.py

debug msas and templates for alphafold2 backend too. clean dumps to save only end files for msas

2026-03-18 12:15:38 +01:00

check_alphafold2_predictions.py

Use parser from pip

2025-11-12 13:44:18 +01:00

check_alphafold3_predictions.py

Fix AF3 viewer annotation tables for duplicate residues

2026-03-26 11:48:24 +01:00

check_alphalink_predictions.py

Use parser from pip

2025-11-12 13:44:18 +01:00

test_af2_to_af3_msa.py

Use AF2 all-seq species metadata to pair with AF3

2026-03-18 12:15:38 +01:00

test_create_individual_features.py

Remove af3 tests so that CI/CD doesn't die

2025-09-25 15:52:47 +02:00

test_custom_db.py

Make sure autogenerated pseudo pdb ID is parsable by AF2 parser

2025-12-16 10:52:32 +01:00

test_features_with_templates.py

Fix #534

2025-09-11 16:36:44 +02:00

test_modelcif.py

Fix #575

2026-02-10 11:47:03 +01:00

test_output_paths.py

Prevent AF3 shared-root outputs from escaping via dot-only job names

2026-03-19 15:03:14 +01:00

test_post_prediction.py

Check keys to be removed are not removed if --remove_keys_from_pickles=false

2025-01-17 10:29:53 +01:00

test_remove_clashes_low_plddt.py

Flat structure for tests: initial commit

2024-07-26 15:18:09 +02:00