mirror of
https://github.com/KosinskiLab/AlphaPulldown.git
synced 2026-06-04 14:14:24 +08:00
fc41c1a5eb
- Strip _entity_poly_seq from generated template mmCIF so AF3 reconstructs _pdbx_poly_seq_scheme from _atom_site, avoiding UNK/gap mismatches - Build query_to_template_map using only residues with atoms to prevent OOB indexing in template features - Add --debug_templates flag to optionally dump generated template mmCIFs into templates_debug/ - Keep templates enabled; test test__chopped_dimer now passes
109 lines
2.0 KiB
Bash
Executable File
109 lines
2.0 KiB
Bash
Executable File
#! /bin/sh
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prefix=/home/dmolodenskiy/AlphaPulldown/conda
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exec_prefix=${prefix}
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includedir=${prefix}/include
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libdir=${exec_prefix}/lib
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cflags=
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libs=
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usage()
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{
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cat <<EOF
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Usage: xml2-config [OPTION]
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Known values for OPTION are:
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--prefix=DIR change libxml prefix [default $prefix]
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--exec-prefix=DIR change libxml exec prefix [default $exec_prefix]
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--libs print library linking information
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add --dynamic to print only shared libraries
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--cflags print pre-processor and compiler flags
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--modules module support enabled
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--help display this help and exit
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--version output version information
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EOF
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exit $1
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}
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if test $# -eq 0; then
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usage 1
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fi
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while test $# -gt 0; do
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case "$1" in
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-*=*) optarg=`echo "$1" | sed 's/[-_a-zA-Z0-9]*=//'` ;;
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*) optarg= ;;
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esac
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case "$1" in
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--prefix=*)
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prefix=$optarg
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includedir=$prefix/include
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libdir=$prefix/lib
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;;
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--prefix)
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echo $prefix
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;;
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--exec-prefix=*)
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exec_prefix=$optarg
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libdir=$exec_prefix/lib
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;;
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--exec-prefix)
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echo $exec_prefix
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;;
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--version)
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echo 2.13.5
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exit 0
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;;
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--help)
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usage 0
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;;
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--cflags)
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cflags="-I${includedir}/libxml2 -I/home/dmolodenskiy/AlphaPulldown/conda/include "
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;;
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--libtool-libs)
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if [ -r ${libdir}/libxml2.la ]
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then
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echo ${libdir}/libxml2.la
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fi
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;;
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--modules)
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echo 1
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;;
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--libs)
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if [ "$2" = "--dynamic" ]; then
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shift
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libs="-lxml2 "
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else
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libs="-lxml2 -L/home/dmolodenskiy/AlphaPulldown/conda/lib -lz -L/home/dmolodenskiy/AlphaPulldown/conda/lib -llzma -L/home/dmolodenskiy/AlphaPulldown/conda/lib -liconv -lm -ldl "
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fi
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if [ "-L${libdir}" != "-L/usr/lib" -a "-L${libdir}" != "-L/usr/lib64" ]; then
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libs="-L${libdir} $libs"
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fi
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;;
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*)
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usage 1
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;;
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esac
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shift
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done
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if test -n "$cflags$libs"; then
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echo $cflags $libs
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fi
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exit 0
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