73 Commits

Author	SHA1	Message	Date
samsledje	f588d257fa	merge main into dev -- there is still clean up to do for sure	2022-06-24 20:32:07 -04:00
Samuel Sledzieski	7410015298	Update requirements.txt	2022-06-24 10:28:28 -04:00
Samuel Sledzieski	a49759174f	Delete docs/source/_build/html directory	2022-06-24 10:21:23 -04:00
samsledje	bec4b6fd0e	update command testing	2022-06-23 12:40:27 -04:00
samsledje	6000faccfb	fix training script	2022-06-23 12:03:39 -04:00
samsledje	ea41becbb6	update gitignore, logging, and docs	2022-06-23 11:38:08 -04:00
samsledje	e883489d03	update docs and citations	2022-06-23 10:19:16 -04:00
samsledje	78ca8aad61	clean up docs	2022-04-29 10:44:20 -04:00
samsledje	39848bb98c	rtd	2022-04-29 10:36:47 -04:00
samsledje	b536e89169	fixing rtd	2022-04-29 10:35:26 -04:00
samsledje	03781b3701	trying to fix rtd	2022-04-29 10:30:58 -04:00
samsledje	ceca25a2c2	update documentation	2022-04-29 10:15:04 -04:00
samsledje	71f9e52ff5	pull main into dev	2022-02-08 13:02:15 -05:00
samsledje	a82dd7d6b8	code style updated with black	2022-02-08 12:00:11 -05:00
samsledje	65ebd2381e	training seems to be fixed, require a few more cleaning passes and tests before publishing	2022-02-07 12:56:32 -05:00
Samuel Sledzieski	30c3654f24	Update index.rst	2021-11-08 16:54:00 -05:00
samsledje	3fa7ea685f	v0.1.6 Fixed bug in data augmentation	2021-09-06 13:18:27 -04:00
Samuel Sledzieski	d0d83fa544	docs update	2021-08-15 20:11:23 -05:00
Samuel Sledzieski	5247099818	black formatting	2021-07-04 10:48:05 -04:00
Samuel Sledzieski	69bc09e8eb	updated link to preprint in docs	2021-04-23 10:08:24 -04:00
Samuel Sledzieski	9dc847fda7	added links to ecoli data to docs	2021-03-06 10:47:18 -05:00
Samuel Sledzieski	78cf91183c	removed duplicate pytorch requirement in docs	2021-02-17 10:09:37 -05:00
Samuel Sledzieski	7c2c473f5d	updated documentation for 0.1.3	2021-02-17 09:53:52 -05:00
Samuel Sledzieski	9d54338f09	Update installation.rst	2020-11-18 16:29:21 -05:00
Sam Sledzieski	25020a76b8	Clarify updated prediction usage	2020-11-18 15:25:30 -05:00
Sam Sledzieski	4aac90a4f8	Fixed linking typos	2020-11-18 15:19:34 -05:00
Sam Sledzieski	fe88711c61	Provided links to data and pre-trained models	2020-11-18 15:09:36 -05:00
Sam Sledzieski	8be2dca037	Updated installation	2020-11-18 14:50:21 -05:00
Sam Sledzieski	83fefb6cac	Merge branch 'main' of https://github.com/samsledje/D-SCRIPT into main	2020-11-18 14:42:29 -05:00
Sam Sledzieski	e4a0c80f83	Move prediction to be more prominent	2020-11-18 14:42:26 -05:00
Samuel Sledzieski	974230138f	Merge branch 'main' of github.com:samsledje/D-SCRIPT into main	2020-11-18 14:40:46 -05:00
Samuel Sledzieski	96a437ac5f	fixed typo in automodule	2020-11-18 14:40:34 -05:00
Sam Sledzieski	2b875e4b5b	Doc fixes	2020-11-18 14:37:52 -05:00
Samuel Sledzieski	0c65b00d90	rebuilt docs	2020-11-18 14:36:53 -05:00
Samuel Sledzieski	2facf4e162	Merge branch 'main' of github.com:samsledje/D-SCRIPT into main	2020-11-18 14:31:36 -05:00
Samuel Sledzieski	c253373788	updated prediction and evaluation bugs, pretrained model loading	2020-11-18 14:31:22 -05:00
Sam Sledzieski	2b7125043f	Cleaned requirements	2020-11-17 15:18:19 -05:00
Sam Sledzieski	afafea8791	Update environment to install pytorch gpu	2020-11-17 15:16:35 -05:00
Sam Sledzieski	3f01cc3371	Fix broken link in index	2020-11-17 13:26:19 -05:00
Sam Sledzieski	2f5fe823f6	Update installation	2020-11-17 13:17:15 -05:00
Sam Sledzieski	368ad46d9a	Update prediction usage	2020-11-17 12:11:48 -05:00
Samuel Sledzieski	e365a6a74d	updated installation instructions, bug fixing on commands	2020-11-17 11:46:19 -05:00
Sam Sledzieski	ce14da19ea	Updated quickstart and installation instructions	2020-11-17 09:15:50 -05:00
Samuel Sledzieski	e05bebb22e	Merge branch 'main' of github.com:samsledje/D-SCRIPT into main	2020-11-17 09:13:23 -05:00
Samuel Sledzieski	7d26eb2056	updated conda environment	2020-11-17 09:13:18 -05:00
Samuel Sledzieski	2b335e96fa	Update requirements.txt	2020-11-16 22:32:36 -05:00
Sam Sledzieski	cdad6241f8	Fixed links in commands page	2020-11-16 22:19:41 -05:00
Samuel Sledzieski	07b6a5f790	Update index.html	2020-11-16 21:59:57 -05:00
Sam Sledzieski	27c029bd4f	Documentation version 1	2020-11-16 21:53:26 -05:00
Sam Sledzieski	0e912f5dd0	Clean docs	2020-11-16 18:26:57 -05:00