16 Commits

Author	SHA1	Message	Date
samsledje	f588d257fa	merge main into dev -- there is still clean up to do for sure	2022-06-24 20:32:07 -04:00
samsledje	dfbc81829f	use biopython for fasta io	2022-06-23 13:36:06 -04:00
samsledje	b72db922c1	language model module use log function	2022-02-11 16:30:12 -05:00
samsledje	a82dd7d6b8	code style updated with black	2022-02-08 12:00:11 -05:00
Samuel Sledzieski	c5851d1173	update logging and commands	2021-09-01 18:29:04 -05:00
Samuel Sledzieski	f8c59cf694	begin to migrate data to lightning	2021-08-15 20:12:18 -05:00
Samuel Sledzieski	d2c76f3549	fixing precommit hooks	2021-07-04 17:48:02 -04:00
Samuel Sledzieski	5247099818	black formatting	2021-07-04 10:48:05 -04:00
Samuel Sledzieski	dc04e373e3	put model in eval mode before making new predictions	2020-11-30 15:58:43 -05:00
Samuel Sledzieski	c253373788	updated prediction and evaluation bugs, pretrained model loading	2020-11-18 14:31:22 -05:00
Samuel Sledzieski	64f80d935d	updated lm embedding function to download model from cb site	2020-11-17 13:09:26 -05:00
Samuel Sledzieski	1e9250dc1e	updated bug in contact	2020-11-17 10:27:11 -05:00
Sam Sledzieski	0276d29ced	Fix device setting package-wide	2020-11-17 09:44:13 -05:00
Sam Sledzieski	27c029bd4f	Documentation version 1	2020-11-16 21:53:26 -05:00
Samuel Sledzieski	4e4083b530	black code formatting	2020-11-16 18:54:37 -05:00
Sam Sledzieski	0e912f5dd0	Clean docs	2020-11-16 18:26:57 -05:00