248 Commits

Author SHA1 Message Date
Samuel Sledzieski
90b46d8385 Update README.md 2020-11-18 15:55:38 -05:00
Sam Sledzieski
25020a76b8 Clarify updated prediction usage 2020-11-18 15:25:30 -05:00
Sam Sledzieski
aec32ef2ee Added periods to class descriptions 2020-11-18 15:20:45 -05:00
Sam Sledzieski
4aac90a4f8 Fixed linking typos 2020-11-18 15:19:34 -05:00
Sam Sledzieski
fe88711c61 Provided links to data and pre-trained models 2020-11-18 15:09:36 -05:00
Sam Sledzieski
8be2dca037 Updated installation 2020-11-18 14:50:21 -05:00
Sam Sledzieski
83fefb6cac Merge branch 'main' of https://github.com/samsledje/D-SCRIPT into main 2020-11-18 14:42:29 -05:00
Sam Sledzieski
e4a0c80f83 Move prediction to be more prominent 2020-11-18 14:42:26 -05:00
Samuel Sledzieski
974230138f Merge branch 'main' of github.com:samsledje/D-SCRIPT into main 2020-11-18 14:40:46 -05:00
Samuel Sledzieski
96a437ac5f fixed typo in automodule 2020-11-18 14:40:34 -05:00
Sam Sledzieski
2b875e4b5b Doc fixes 2020-11-18 14:37:52 -05:00
Samuel Sledzieski
0c65b00d90 rebuilt docs 2020-11-18 14:36:53 -05:00
Samuel Sledzieski
47a0c2d2d6 fix columns in human example data 2020-11-18 14:33:23 -05:00
Samuel Sledzieski
2facf4e162 Merge branch 'main' of github.com:samsledje/D-SCRIPT into main 2020-11-18 14:31:36 -05:00
Samuel Sledzieski
c253373788 updated prediction and evaluation bugs, pretrained model loading 2020-11-18 14:31:22 -05:00
Sam Sledzieski
2b7125043f Cleaned requirements 2020-11-17 15:18:19 -05:00
Sam Sledzieski
afafea8791 Update environment to install pytorch gpu 2020-11-17 15:16:35 -05:00
Sam Sledzieski
3f01cc3371 Fix broken link in index 2020-11-17 13:26:19 -05:00
Sam Sledzieski
2f5fe823f6 Update installation 2020-11-17 13:17:15 -05:00
Samuel Sledzieski
64f80d935d updated lm embedding function to download model from cb site 2020-11-17 13:09:26 -05:00
Sam Sledzieski
368ad46d9a Update prediction usage 2020-11-17 12:11:48 -05:00
Samuel Sledzieski
3328f3bf0c update prediction module to save cmaps 2020-11-17 12:11:22 -05:00
Samuel Sledzieski
e365a6a74d updated installation instructions, bug fixing on commands 2020-11-17 11:46:19 -05:00
Sam Sledzieski
581a6cf076 Add tqdm to training 2020-11-17 10:28:11 -05:00
Samuel Sledzieski
1e9250dc1e updated bug in contact 2020-11-17 10:27:11 -05:00
Sam Sledzieski
0276d29ced Fix device setting package-wide 2020-11-17 09:44:13 -05:00
Sam Sledzieski
ce14da19ea Updated quickstart and installation instructions 2020-11-17 09:15:50 -05:00
Samuel Sledzieski
e05bebb22e Merge branch 'main' of github.com:samsledje/D-SCRIPT into main 2020-11-17 09:13:23 -05:00
Samuel Sledzieski
7d26eb2056 updated conda environment 2020-11-17 09:13:18 -05:00
Samuel Sledzieski
3bb2a91313 Update setup.py 2020-11-16 22:32:50 -05:00
Samuel Sledzieski
2b335e96fa Update requirements.txt 2020-11-16 22:32:36 -05:00
Sam Sledzieski
cdad6241f8 Fixed links in commands page 2020-11-16 22:19:41 -05:00
Samuel Sledzieski
07b6a5f790 Update index.html 2020-11-16 21:59:57 -05:00
Sam Sledzieski
27c029bd4f Documentation version 1 2020-11-16 21:53:26 -05:00
Samuel Sledzieski
4e4083b530 black code formatting 2020-11-16 18:54:37 -05:00
Sam Sledzieski
0e912f5dd0 Clean docs 2020-11-16 18:26:57 -05:00
Sam Sledzieski
c2981f3ea8 Update pip requirements 2020-11-16 18:01:44 -05:00
Samuel Sledzieski
4d959f8eaa Update .readthedocs.yml 2020-11-16 17:57:17 -05:00
Samuel Sledzieski
21c7145673 added pip requirements file 2020-11-16 17:54:41 -05:00
Samuel Sledzieski
d0e9b293f1 Update .readthedocs.yml 2020-11-16 17:48:48 -05:00
Sam Sledzieski
38354c1127 Merge branch 'main' of https://github.com/samsledje/D-SCRIPT into main 2020-11-16 17:40:15 -05:00
Sam Sledzieski
499497adc7 Saving documentation progress 2020-11-16 17:39:59 -05:00
Samuel Sledzieski
fcf8641978 Merge branch 'main' of github.com:samsledje/D-SCRIPT into main 2020-11-16 14:38:12 -05:00
Samuel Sledzieski
6112a0c59a redirect github sites to docs 2020-11-16 14:38:07 -05:00
Samuel Sledzieski
99893f8202 Create .readthedocs.yml 2020-11-16 12:01:47 -05:00
Samuel Sledzieski
c6f33d77b9 Merge branch 'main' of github.com:samsledje/D-SCRIPT into main 2020-11-16 11:42:47 -05:00
Samuel Sledzieski
67709d31a6 updated api docs 2020-11-16 11:42:42 -05:00
Samuel Sledzieski
7e3931e66d Update README.md 2020-11-16 11:32:39 -05:00
Samuel Sledzieski
9d2dd08289 updated api docs 2020-11-16 11:26:50 -05:00
Samuel Sledzieski
dbeb17bacb cleaned up old functions 2020-11-16 11:00:50 -05:00