44 Commits

Author	SHA1	Message	Date
Samuel Sledzieski	1ed94e854e	merge	2021-10-12 11:59:15 -04:00
Jesse Yang	d4ca3e7f88	Added email confirmation and create message functionality	2021-08-22 16:13:25 +02:00
Samuel Sledzieski	7fc19871c3	fixed error in dscript documentation	2021-08-17 09:19:45 -05:00
Samuel Sledzieski	2b56b4d426	run pre-commit on all files	2021-08-16 20:52:51 -05:00
Jesse Yang	76582d47db	Converted all pair uploads to string with commas	2021-08-02 10:28:51 -04:00
Jesse Yang	6497e7422d	Predicts based on inputs	2021-07-26 15:46:07 -05:00
Jesse Yang	48599a1b64	Added parse_input method	2021-07-26 15:11:21 -05:00
Jesse Yang	85548f7de2	Remove all .DS_Store	2021-07-07 10:41:44 -05:00
Jesse Yang	15b57f3392	Added parse_bytes method	2021-07-07 10:19:56 -05:00
Jesse Yang	fd898c2734	Added results directory to gitignore	2021-07-01 13:45:32 -05:00
Samuel Sledzieski	e66a95d768	updated package level imports	2021-04-23 10:09:04 -04:00
Samuel Sledzieski	7034c880a1	Bug fix issue #7 - typo in ContactModule.forward()	2021-03-05 10:14:17 -05:00
Samuel Sledzieski	894edfeaa5	fixed logging code to flush file and to not write # at beginning	2021-02-17 10:23:25 -05:00
Samuel Sledzieski	6918c98239	added logging functionality and use it to report skips in predict.py	2021-02-17 10:02:08 -05:00
Samuel Sledzieski	e59ef6c78f	updated arguments to be internally consistent	2021-02-17 10:01:20 -05:00
Samuel Sledzieski	8fb5ba266f	fixed format string	2021-02-16 13:43:03 -05:00
Samuel Sledzieski	f58763efa4	if pair is too large that leads to runtime error, skip and report error instead of breaking	2021-02-16 13:24:24 -05:00
Samuel Sledzieski	2bce0cdbb4	fixed wrong variable name in loading from sequence file	2021-02-03 10:26:00 -05:00
Samuel Sledzieski	dc04e373e3	put model in eval mode before making new predictions	2020-11-30 15:58:43 -05:00
Samuel Sledzieski	4ff927a06b	updated versioning	2020-11-24 11:32:12 -05:00
Sam Sledzieski	25020a76b8	Clarify updated prediction usage	2020-11-18 15:25:30 -05:00
Sam Sledzieski	aec32ef2ee	Added periods to class descriptions	2020-11-18 15:20:45 -05:00
Sam Sledzieski	fe88711c61	Provided links to data and pre-trained models	2020-11-18 15:09:36 -05:00
Samuel Sledzieski	c253373788	updated prediction and evaluation bugs, pretrained model loading	2020-11-18 14:31:22 -05:00
Samuel Sledzieski	64f80d935d	updated lm embedding function to download model from cb site	2020-11-17 13:09:26 -05:00
Samuel Sledzieski	3328f3bf0c	update prediction module to save cmaps	2020-11-17 12:11:22 -05:00
Samuel Sledzieski	e365a6a74d	updated installation instructions, bug fixing on commands	2020-11-17 11:46:19 -05:00
Sam Sledzieski	581a6cf076	Add tqdm to training	2020-11-17 10:28:11 -05:00
Samuel Sledzieski	1e9250dc1e	updated bug in contact	2020-11-17 10:27:11 -05:00
Sam Sledzieski	0276d29ced	Fix device setting package-wide	2020-11-17 09:44:13 -05:00
Sam Sledzieski	27c029bd4f	Documentation version 1	2020-11-16 21:53:26 -05:00
Samuel Sledzieski	4e4083b530	black code formatting	2020-11-16 18:54:37 -05:00
Sam Sledzieski	0e912f5dd0	Clean docs	2020-11-16 18:26:57 -05:00
Sam Sledzieski	38354c1127	Merge branch 'main' of https://github.com/samsledje/D-SCRIPT into main	2020-11-16 17:40:15 -05:00
Sam Sledzieski	499497adc7	Saving documentation progress	2020-11-16 17:39:59 -05:00
Samuel Sledzieski	6112a0c59a	redirect github sites to docs	2020-11-16 14:38:07 -05:00
Samuel Sledzieski	9d2dd08289	updated api docs	2020-11-16 11:26:50 -05:00
Samuel Sledzieski	dbeb17bacb	cleaned up old functions	2020-11-16 11:00:50 -05:00
Samuel Sledzieski	d91898b018	code formatting	2020-11-09 17:56:24 -05:00
Samuel Sledzieski	3cbebbfa89	fix argparser and add citation cmd	2020-11-09 17:51:38 -05:00
Samuel Sledzieski	edad08c4e3	cleaned up how data is loaded	2020-11-09 17:17:31 -05:00
Samuel Sledzieski	441b792223	removed ipynb checkpoints	2020-11-09 16:34:50 -05:00
Samuel Sledzieski	1cfeb6f0a3	updated data loading in train and reformatted everything	2020-11-09 15:37:11 -05:00
Samuel Sledzieski	a97f232db2	restructured so dscript is a module and can be installed	2020-11-09 15:21:37 -05:00