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25 Commits

Author SHA1 Message Date
Samuel Sledzieski
bb4ee75a66 Upload models to huggingface hub, update prediction script to take hf path 2024-09-13 11:02:23 -04:00
Samuel Sledzieski
69eba5e745 Remove symlinks and start huggingface file 2024-09-13 09:38:59 -04:00
samsledje
8b0b7f5a61 issue #44 update predict and forward signature for foldseek 2023-07-24 09:20:13 -04:00
Kapil Devkota
e2700ce39f Minor housekeeping/refactoring 2023-05-25 12:11:14 -04:00
Kapil Devkota
0e9403eab7 Added optimized interaction.py 2023-05-08 01:32:04 -04:00
Kapil Devkota
3afad84144 Added fseek changes 2023-05-08 00:43:40 -04:00
Kapil Devkota
919349dace Added foldseek branch 2022-11-12 00:50:00 -05:00
Samuel Sledzieski
23731a6e91 Update embedding.py 2022-06-30 11:55:09 -04:00
samsledje
6c757ee74c stupid typo 2022-02-11 12:26:47 -05:00
samsledje
b052dbe30e fix issue relating to pretrained models and updated model arguments/parameters 2022-02-11 11:55:55 -05:00
samsledje
a82dd7d6b8 code style updated with black 2022-02-08 12:00:11 -05:00
samsledje
65ebd2381e training seems to be fixed, require a few more cleaning passes and tests before publishing 2022-02-07 12:56:32 -05:00
samsledje
45d693bc2d updated docstrings from legacy code 2021-12-07 12:18:38 -05:00
samsledje
df4e1bf729 0.1.7-dev7 -- training fixed but code extremely messy 2021-12-07 11:46:13 -05:00
Samuel Sledzieski
e66a95d768 updated package level imports 2021-04-23 10:09:04 -04:00
Samuel Sledzieski
7034c880a1 Bug fix issue #7 - typo in ContactModule.forward() 2021-03-05 10:14:17 -05:00
Sam Sledzieski
aec32ef2ee Added periods to class descriptions 2020-11-18 15:20:45 -05:00
Samuel Sledzieski
c253373788 updated prediction and evaluation bugs, pretrained model loading 2020-11-18 14:31:22 -05:00
Samuel Sledzieski
1e9250dc1e updated bug in contact 2020-11-17 10:27:11 -05:00
Sam Sledzieski
27c029bd4f Documentation version 1 2020-11-16 21:53:26 -05:00
Samuel Sledzieski
4e4083b530 black code formatting 2020-11-16 18:54:37 -05:00
Sam Sledzieski
499497adc7 Saving documentation progress 2020-11-16 17:39:59 -05:00
Samuel Sledzieski
9d2dd08289 updated api docs 2020-11-16 11:26:50 -05:00
Samuel Sledzieski
1cfeb6f0a3 updated data loading in train and reformatted everything 2020-11-09 15:37:11 -05:00
Samuel Sledzieski
a97f232db2 restructured so dscript is a module and can be installed 2020-11-09 15:21:37 -05:00