Data
====

Trained Models
--------------

* `Bepler & Berger language model <http://cb.csail.mit.edu/cb/dscript/data/models/lm_v1.sav>`_
* `Human data trained model <http://cb.csail.mit.edu/cb/dscript/data/models/human_v1.sav>`_

Sample Data
-----------

Sequences
~~~~~~~~~

* `Human`_
* `Mouse`_
* `Fly`_
* `Yeast`_
* `Worm`_
* `E.coli`_

Interactions
~~~~~~~~~~~~

* `Human Train`_
* `Human Test`_
* `Mouse Test`_
* `Fly Test`_
* `Yeast Test`_
* `Worm Test`_
* `E. coli Test`_

.. _`Human`: https://github.com/samsledje/D-SCRIPT/blob/main/data/seqs/human.fasta
.. _`Mouse`: https://github.com/samsledje/D-SCRIPT/blob/main/data/seqs/mouse.fasta
.. _`Fly`: https://github.com/samsledje/D-SCRIPT/blob/main/data/seqs/fly.fasta
.. _`Yeast`: https://github.com/samsledje/D-SCRIPT/blob/main/data/seqs/yeast.fasta
.. _`Worm`: https://github.com/samsledje/D-SCRIPT/blob/main/data/seqs/worm.fasta
.. _`E.coli`: https://github.com/samsledje/D-SCRIPT/blob/main/data/seqs/ecoli.fasta
.. _`Human Train`: https://github.com/samsledje/D-SCRIPT/blob/main/data/pairs/human_train.tsv
.. _`Human Test`: https://github.com/samsledje/D-SCRIPT/blob/main/data/pairs/human_test.tsv
.. _`Mouse Test`: https://github.com/samsledje/D-SCRIPT/blob/main/data/pairs/mouse_test.tsv
.. _`Fly Test`: https://github.com/samsledje/D-SCRIPT/blob/main/data/pairs/fly_test.tsv
.. _`Yeast Test`: https://github.com/samsledje/D-SCRIPT/blob/main/data/pairs/yeast_test.tsv
.. _`Worm Test`: https://github.com/samsledje/D-SCRIPT/blob/main/data/pairs/worm_test.tsv
.. _`E. coli Test`: https://github.com/samsledje/D-SCRIPT/blob/main/data/pairs/ecoli_test.tsv