samsledje 4e6c0d9b21 debugging foldseek predict

2023-07-24 11:27:08 -04:00

..

commands

debugging foldseek predict

2023-07-24 11:27:08 -04:00

models

issue #44 update predict and forward signature for foldseek

2023-07-24 09:20:13 -04:00

tests

change language_model.py to use with h5py context

2022-08-26 14:56:34 -04:00

__init__.py

added foldseek prediction, untested

2023-07-24 08:34:48 -04:00

__main__.py

Removed the train_fseek_embed.py file for this branch

2023-05-25 11:40:44 -04:00

alphabets.py

code style updated with black

2022-02-08 12:00:11 -05:00

fasta.py

use biopython for fasta io

2022-06-23 13:36:06 -04:00

foldseek_emb

Added foldseek branch

2022-11-12 00:50:00 -05:00

foldseek.py

added foldseek prediction, untested

2023-07-24 08:34:48 -04:00

glider.py

add topsy turvy pretrained model to api and docs

2022-08-18 11:32:07 -04:00

language_model.py

change language_model.py to use with h5py context

2022-08-26 14:56:34 -04:00

pretrained.py

add topsy turvy pretrained model to api and docs

2022-08-18 11:32:07 -04:00

utils.py

load embeddings in parallel

2022-06-23 16:06:22 -04:00