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@@ -38,11 +38,12 @@ Liu, Jun, Hungyu Chen, and Yang Zhang. "A Corporative Language Model for Protein
5. **ESM-MSA** for Feature Generation: Install the [ESM package](https://github.com/facebookresearch/esm), or use the pre-packaged version within "pplm_contact/external_tools" directory. Download the pre-trained [ESM-MSA model](https://dl.fbaipublicfiles.com/fair-esm/models/esm_msa1_t12_100M_UR50S.pt) and set the "esm_msa_model" parameter in the "pplm_contact/config.py" file.
## Download parameters
You can download the pre-trained parameters of PPLM and its downstream models from the following links:<br>
1. **PPLM**: [pplm_t33_650M.pt](https://1drv.ms/u/c/757b084e424e6c3f/EfSQ1FfvUFNInoQ52uCDFM8B74t3NKMZpSFeGjPLwJlqWA?e=XktDrg)<br>
2. **PPLM-PPI**: [pplm-ppi_parameters.zip](https://1drv.ms/u/c/757b084e424e6c3f/EVyGul5qevZLpKhwgA7yLyUBOy-Wj8mGVmQKlGs0vviLhQ?e=MceTXU)<br>
You can download the pre-trained weights for PPLM and its downstream models from the links below and place them in the weights/ directory:<br>
1. **PPLM**: [pplm_t33_650M.pt](https://1drv.ms/u/c/757b084e424e6c3f/IQD0kNRX71BTSJ6EOdrggxTPAe-LdzSjGaUhXhozy8CZalg?e=jpTD4y)<br>
2. **PPLM-PPI**: [pplm-ppi_parameters.zip](https://1drv.ms/u/c/757b084e424e6c3f/IQABdgnWpB0BTIQiXZecUvYhAerr1glZEZDc5blGnabV5kU?e=X1Pf6M)<br>
3. **PPLM-Affinity**: [pplm-affinity_parameters.zip](https://drive.google.com/file/d/19dB6-3UFoDW9Lz_Kmxk5gdHgAdvYTzyg/view?usp=drive_link)<br>
4. **PLM-Contact**: [pplm-contact_parameters.zip](https://onedrive.live.com/?id=%2Fpersonal%2F757b084e424e6c3f%2FDocuments%2FPPLM%2Fpplm%2Dcontact%5Fparameters%2Ezip&parent=%2Fpersonal%2F757b084e424e6c3f%2FDocuments%2FPPLM)<br>
4. **PLM-Contact**: [pplm-contact_parameters.zip](https://1drv.ms/u/c/757b084e424e6c3f/IQBW2Dp2AQNUTJHixTulJukoAU6NKjzEM6P64wnVxYQVJ2o?e=ftFZxe)<br>
5. **PLM-Contact2**: [pplm-contact_parameters.zip](https://1drv.ms/u/c/757b084e424e6c3f/IQD921oea9EXQqi3OdmFC04vAXlG_XSfho5FqupHmiX7nm4?e=jg0xgX)<br>
After downloading, please move each parameters to the corresponding directory: models/ under pplm/, pplm_ppi/, pplm_affinity/, and pplm_contact/.