From c278bf0ce028f3626e7c2650faee3f9cd9740c46 Mon Sep 17 00:00:00 2001 From: Jun Liu Date: Fri, 31 Oct 2025 14:15:42 +0800 Subject: [PATCH] Update README.md --- README.md | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index adfff9e..7236e63 100644 --- a/README.md +++ b/README.md @@ -38,11 +38,11 @@ binding affinity, and identifying interface residue contacts, respectively. 5. **ESM-MSA** for Feature Generation: Install the [ESM package](https://github.com/facebookresearch/esm), or use the pre-packaged version within "pplm_contact/external_tools" directory. Download the pre-trained [ESM-MSA model](https://dl.fbaipublicfiles.com/fair-esm/models/esm_msa1_t12_100M_UR50S.pt) and set the "esm_msa_model" parameter in the "config.py" file. ## Download parameters -You can download the pre-trained parameters of PPLM and its downstream models from the following link: -PPLM: [pplm_t33_650M.pt](https://1drv.ms/u/c/757b084e424e6c3f/EfSQ1FfvUFNInoQ52uCDFM8B74t3NKMZpSFeGjPLwJlqWA?e=XktDrg) -PPLM-PPI: [pplm-ppi_parameters.zip](https://1drv.ms/u/c/757b084e424e6c3f/EVyGul5qevZLpKhwgA7yLyUBOy-Wj8mGVmQKlGs0vviLhQ?e=MceTXU) -PPLM-Affinity: [pplm-affinity_parameters.zip](https://drive.google.com/file/d/19dB6-3UFoDW9Lz_Kmxk5gdHgAdvYTzyg/view?usp=drive_link) -PPLM-Contact: [pplm-contact_parameters.zip](https://onedrive.live.com/?id=%2Fpersonal%2F757b084e424e6c3f%2FDocuments%2FPPLM%2Fpplm%2Dcontact%5Fparameters%2Ezip&parent=%2Fpersonal%2F757b084e424e6c3f%2FDocuments%2FPPLM) +You can download the pre-trained parameters of PPLM and its downstream models from the following link:
+1. **PPLM**: [pplm_t33_650M.pt](https://1drv.ms/u/c/757b084e424e6c3f/EfSQ1FfvUFNInoQ52uCDFM8B74t3NKMZpSFeGjPLwJlqWA?e=XktDrg)
+2. **PPLM-PPI**: [pplm-ppi_parameters.zip](https://1drv.ms/u/c/757b084e424e6c3f/EVyGul5qevZLpKhwgA7yLyUBOy-Wj8mGVmQKlGs0vviLhQ?e=MceTXU)
+3. **PPLM-Affinity**: [pplm-affinity_parameters.zip](https://drive.google.com/file/d/19dB6-3UFoDW9Lz_Kmxk5gdHgAdvYTzyg/view?usp=drive_link)
+4. **PLM-Contact**: [pplm-contact_parameters.zip](https://onedrive.live.com/?id=%2Fpersonal%2F757b084e424e6c3f%2FDocuments%2FPPLM%2Fpplm%2Dcontact%5Fparameters%2Ezip&parent=%2Fpersonal%2F757b084e424e6c3f%2FDocuments%2FPPLM)
Please move the downloaded parameters to the models/ folder of pplm/, pplm_ppi/, pplm_affinity/, and pplm_contact/