diff --git a/README.md b/README.md index 45f2f29..a69392d 100644 --- a/README.md +++ b/README.md @@ -114,6 +114,14 @@ python run_pplm.py example/seq1.fasta example/seq2.fasta example/seq1-seq2.pplm. ### PPLM-PPI - Command: ```bash +python python run_pplm-ppi.py example/seq1.fasta example/seq2.fasta +``` +- Output: Predicted interaction probability printed to the command line: +``` +Predicted interaction score: 0.9431089 +``` +<--- +```bash python run_pplm-ppi.py example/seq_pairs.fasta example/seq_pairs.results ``` - Output: The predicted interaction probabilities are saved in example/seq_pairs.results: @@ -136,6 +144,7 @@ Each entry consists of: • Protein Pair: Represented in the format >Protein1:Protein2. • Interaction Probability: The likelihood of interaction between the given protein pair. ``` +--> ### PPLM-Affinity - Command: