mirror of
https://github.com/junliu621/PPLM.git
synced 2026-06-04 14:24:22 +08:00
16 lines
580 B
Python
16 lines
580 B
Python
import os
|
|
|
|
hhsuite_dir = "/XXX/hh-suite/build"
|
|
|
|
hhblits = os.path.join(hhsuite_dir, "bin/hhblits")
|
|
hhmake = os.path.join(hhsuite_dir, "bin/hhmake")
|
|
reformat = os.path.join(hhsuite_dir, "scripts/reformat.pl")
|
|
hhfilter = os.path.join(hhsuite_dir, "bin/hhfilter")
|
|
|
|
UniRef_database = "/XXX/uniref30/UniRef30_2021_03"
|
|
esm_msa_model = "/XXX/esm_msa1_t12_100M_UR50S.pt"
|
|
|
|
pplm_contact_dir = os.path.dirname(os.path.abspath(__file__))
|
|
ccmpred = os.path.join(pplm_contact_dir, "external_tools/ccmpred")
|
|
esm_msa = os.path.join(pplm_contact_dir, "external_tools/extract_esm_msa_features.py")
|