Nate Bennett ec60526e5d Add full nanobody design pipeline script ...

- Introduced a new script `nanobody_full_pipeline.sh` that orchestrates the complete workflow for nanobody design, including RFdiffusion for backbone structure design, ProteinMPNN for sequence generation, and RF2 for structure refinement.
- The script includes customizable parameters for input files, output directory, and various design settings, facilitating user-friendly execution of the pipeline.
- Added detailed echo statements to provide feedback on the progress and outputs of each step in the pipeline.

2026-01-28 04:04:15 +00:00

..

example_inputs

Fix ProteinMPNN off-by-1 indexing issue

2026-01-27 10:09:25 +00:00

proteinmpnn

Refactor example scripts and update CLI options for antibody design. Adjusted paths in rf2_predict.py, enhanced example scripts for ProteinMPNN and RF2 with improved directory handling, and added --augment-eps option for backbone noise augmentation in inference CLI.

2026-01-27 06:09:07 +00:00

rf2

Refactor example scripts and update CLI options for antibody design. Adjusted paths in rf2_predict.py, enhanced example scripts for ProteinMPNN and RF2 with improved directory handling, and added --augment-eps option for backbone noise augmentation in inference CLI.

2026-01-27 06:09:07 +00:00

rfdiffusion

Add example script for designing nanobody backbones targeting Influenza Haemagglutinin A

2026-01-27 10:14:13 +00:00

__init__.py

Initial Commit

2025-01-21 19:21:29 -08:00

nanobody_full_pipeline.sh

Add full nanobody design pipeline script

2026-01-28 04:04:15 +00:00