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10 lines
892 B
Bash
Executable File
10 lines
892 B
Bash
Executable File
#!/bin/bash
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# This example is a copy of design_partialdiffusion_withseq.sh
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# The only difference is we specify multiple disjoint sequences to hold constant.
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# In this case, we provide the residues of the beginning and end of the peptide, instead of the whole sequence.
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# We can provide comma-separated ranges to specify this: provide_seq=[172-177,200-205]
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# Note the ranges do not necessarily need to lie on the same chain as in this example.
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# However, positions are 0-indexed over the whole sequence--not per-chain-- so care must be taken when providing ranges to provide_seq.
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../scripts/run_inference.py inference.output_prefix=example_outputs/design_partialdiffusion_peptidewithmultiplesequence inference.input_pdb=input_pdbs/peptide_complex_ideal_helix.pdb 'contigmap.contigs=["172-172/0 34-34"]' diffuser.partial_T=10 inference.num_designs=10 'contigmap.provide_seq=[172-177,200-205]'
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