woodsh17 723a66408c Reverting changes to flag name, so you still use scaffoldguided.scaffoldguided=True instead of scaffoldguided_enabled

2025-11-18 12:26:26 -06:00

..

input_pdbs

add .sh examples, gabarap pdb, import numpy

2025-06-22 17:56:19 -07:00

target_folds

Initial commit to RFdiffusion

2023-03-30 04:56:09 -07:00

tim_barrel_scaffold

Initial commit to RFdiffusion

2023-03-30 04:56:09 -07:00

design_cyclic_oligos.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_dihedral_oligos.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_enzyme.sh

restructuring library as a python module

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design_macrocyclic_binder.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_macrocyclic_monomer.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_motifscaffolding_inpaintseq.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_motifscaffolding_with_target.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_motifscaffolding.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_nickel.sh

Change design_nickel.sh num_designs back to 15

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design_partialdiffusion_multipleseq.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_partialdiffusion_withseq.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_partialdiffusion.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_ppi_flexible_peptide_with_secondarystructure_specification.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_ppi_flexible_peptide.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_ppi_scaffolded.sh

Reverting changes to flag name, so you still use scaffoldguided.scaffoldguided=True instead of scaffoldguided_enabled

2025-11-18 12:26:26 -06:00

design_ppi.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_tetrahedral_oligos.sh

Reduce length for design_tetrahedral_oligos to 600 to reduce run time

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design_timbarrel.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_unconditional_w_contact_potential.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_unconditional_w_monomer_ROG.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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design_unconditional.sh

Change num_designs in examples back to 10, since this is reset in test_diffusion.py

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ppi_scaffolds_subset.tar.gz

Initial commit to RFdiffusion

2023-03-30 04:56:09 -07:00