From 9364b8fc389afc2b33b60657e39c004349fe2e65 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?J=C3=A9r=C3=B4me=20Tubiana?= Date: Sun, 31 Oct 2021 16:01:15 +0200 Subject: [PATCH] bug fix --- utilities/paths.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/utilities/paths.py b/utilities/paths.py index 31f7abb..3573dff 100644 --- a/utilities/paths.py +++ b/utilities/paths.py @@ -48,7 +48,7 @@ elif mode == 'tau': homology_folder = library_folder + 'baselines/homology/' # Where files are stored for homology baseline. path2hhblits = '/specific/netapp5_2/iscb/wolfson/sequence_database/hh-suite/build/bin/hhblits' # Path to hhblits binary. Not required if using ScanNet_noMSA networks. # path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2018_08/uniclust30_2018_08' # Path to sequence database Not required if using ScanNet_noMSA networks. - path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2020_06/uniclust30_2020_06' # Path to sequence database Not required if using ScanNet_noMSA networks. + path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2020_06/UniRef30_2020_06' # Path to sequence database Not required if using ScanNet_noMSA networks. path_to_dssp = '/specific/a/home/cc/students/cs/jeromet/Drive/Scripts/3D_Proteins/xssp-3.0.9/mkdssp' # Path to dssp binary. Only for reproducing baseline performance. path_to_msms = '/specific/a/home/cc/students/cs/jeromet/Drive/Scripts/3D_Proteins/msms/msms.x86_64Linux2.2.6.1' # Path to msms binary. Only for reproducing baseline performance. path_to_multiprot = '/home/iscb/wolfson/jeromet/MultiProt/multiprot.Linux' # Path to multiprot executable. Only relevant for homology baseline @@ -65,7 +65,7 @@ elif mode == 'tau_webserver': homology_folder = library_folder + 'baselines/homology/' # Where files are stored for homology baseline. path2hhblits = '/specific/netapp5_2/iscb/wolfson/sequence_database/hh-suite/build/bin/hhblits' # Path to hhblits binary. Not required if using ScanNet_noMSA networks. # path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2018_08/uniclust30_2018_08' # Path to sequence database Not required if using ScanNet_noMSA networks. - path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2020_06/uniclust30_2020_06' # Path to sequence database Not required if using ScanNet_noMSA networks. + path2sequence_database = '/specific/netapp5_2/iscb/wolfson/sequence_database/uniclust30_2020_06/UniRef30_2020_06' # Path to sequence database Not required if using ScanNet_noMSA networks. path_to_dssp = '/specific/a/home/cc/students/cs/jeromet/Drive/Scripts/3D_Proteins/xssp-3.0.9/mkdssp' # Path to dssp binary. Only for reproducing baseline performance. path_to_msms = '/specific/a/home/cc/students/cs/jeromet/Drive/Scripts/3D_Proteins/msms/msms.x86_64Linux2.2.6.1' # Path to msms binary. Only for reproducing baseline performance. path_to_multiprot = None # Path to multiprot executable. Only relevant for homology baseline