19 Commits

Author	SHA1	Message	Date
Ben Perry	a0cf8b472c	adding alternative HF endpoint as documentation	2026-05-04 11:18:25 -04:00
Benjamin Perry	74ee907dcf	updating temp_dir flag to passthrough to MMSeqs for HPC	2026-04-11 11:25:21 -04:00
Benjamin Perry	902c2f065d	adding --jax_compilation_cache_dir flag to avoid model recompilation across runs	2026-04-10 22:29:00 -04:00
Benjamin Perry	9b1e5653d4	updating readme	2026-04-10 16:45:33 -04:00
Benjamin Perry	e79c6db693	Merge branch 'feature/rna-nhmmer'	2026-04-10 16:41:51 -04:00
Benjamin Perry	e7b7783364	adding modal HF_TOKEN secret	2026-04-10 16:26:27 -04:00
Benjamin Perry	257c4796c3	updating README instructions	2026-04-10 15:50:38 -04:00
Benjamin Perry	9a6174ea70	fixing gpu cli arg for run model	2026-04-07 23:37:47 -04:00
Benjamin Perry	f0e51e4603	adding RNA search functionality	2026-04-06 12:59:38 -04:00
Benjamin Perry	7aa6cdc423	adding temporary test of mmseqs RNA/DNA search + NHmmer fallback	2026-03-17 20:04:24 -04:00
Ben Perry	840b2cc46c	updating README and CLI install instructions	2026-03-16 11:06:01 -04:00
jasonkim8652	e832926dbe	remove MSA server, add HuggingFace pre-built DB download and upload scripts	2026-03-02 09:41:08 -05:00
Benjamin Perry	83cac316ea	updating documentation for correct run modal command	2026-02-26 22:26:22 -05:00
Ben Perry	576201671d	Update README.md ... Updating links and citations and fixing AlphaFast citation	2026-02-19 19:10:01 -05:00
Ben Perry	e91a05e93d	Update README.md ... Fixing bioarxiv link	2026-02-19 01:36:24 -05:00
Ben Perry	a59ef81777	Update README.md	2026-02-19 01:35:54 -05:00
Ben Perry	17cc3a61b0	Update README.md ... Adding bioarxiv link + removing eprint field from bioarxiv citation	2026-02-19 01:29:04 -05:00
Ben Perry	0b68229f4b	Update README.md ... Adding bioarxiv citation.	2026-02-18 23:45:31 -05:00
Ben Perry	625a3839ef	initial commit	2026-02-17 14:10:40 -05:00