Commit Graph

163 Commits

Author SHA1 Message Date
Tim Green
c9ffb0bc18 Use Ubuntu 18.04 LTS image.
PiperOrigin-RevId: 387763552
Change-Id: I2a9753dfca2853de7f5c07c17cc7b2f7d12cf197
2021-07-30 02:20:00 -07:00
Alex Bridgland
00c4c91dcc Log the total MSA size and number of templates.
PiperOrigin-RevId: 387577557
Change-Id: I37c0a748dd3d8d3d179aae579c5504d7ec92ecaf
2021-07-29 07:16:10 -07:00
Tim Green
b3ed8603e8 Switch to Tensorflow CPU-only. GPU not needed for data pipeline.
PiperOrigin-RevId: 387576219
Change-Id: Ic735f068df2a3e9f53bed836f172c08f79ac231c
2021-07-29 07:07:05 -07:00
Augustin Zidek
bc5547b6c2 Change tex -> bibtex for nicer syntax highlighting.
PiperOrigin-RevId: 387546070
Change-Id: I24cce3825801dde09be70970cf48141679762a2a
2021-07-29 03:04:54 -07:00
Tom Ward
1e216f93f0 Fix import ordering.
PiperOrigin-RevId: 387085679
Change-Id: I73287fcd0a29e899543b64c596e306195a2f435e
2021-07-27 05:31:03 -07:00
Tom Ward
c9e6fedb6b Collapse hh-suite install steps into single layer.
PiperOrigin-RevId: 387060806
Change-Id: Ifa71ce119182ed79a379e57946b2b694e134ef14
2021-07-27 02:24:29 -07:00
DeepMind
acf25fc879 Switch to using cudnn base image.
PiperOrigin-RevId: 387058301
Change-Id: If7d2716bfe89228e9fb8f909b72c425bd89f1f7f
2021-07-27 02:04:57 -07:00
DeepMind
2028cd0a51 Write out pdb70_hits.hhr alongside other MSA outputs.
PiperOrigin-RevId: 386894639
Change-Id: I1ef2018a48398cf8201ac38fe129b004672ad22f
2021-07-26 09:41:18 -07:00
DeepMind
20a705778f Correct mgnify clusters filename.
PiperOrigin-RevId: 386841647
Change-Id: Ie3ad390fc4b53b839f15c01f3b24bd25c77578b6
2021-07-26 04:24:53 -07:00
DeepMind
d3a4eefdfc Fix a link in the README
PiperOrigin-RevId: 386417647
Change-Id: I6f2121f3c02d3ef97467f46c5e651ca1b0f2eab2
2021-07-23 02:55:24 -07:00
Saran Tunyasuvunakool
0bab1bf84d Add a Colab notebook, add reduced BFD, and various other fixes and improvements.
PiperOrigin-RevId: 386228948
2021-07-22 15:16:43 +01:00
Tim Green
d26287ea57 Switch BFD download script to mirror. 2021-07-16 23:11:24 +00:00
Augustin-Zidek
1109480e6f Initial release of AlphaFold.
PiperOrigin-RevId: 384954738
v2.0.0
2021-07-15 18:44:37 +01:00