Augustin Zidek
b1d8619675
Use pytest for testing instead of setup.py test
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PiperOrigin-RevId: 789706772
Change-Id: Id4d58250e03bc41ab7d9a90c3d569266cb2db4ad
2025-08-01 04:19:07 -07:00
Augustin Zidek
a2217f031e
Pin setuptools on a version smaller than 72.0.0.
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PiperOrigin-RevId: 660325717
Change-Id: I11b5cf0b0b7cc8bfa48de170a1653e013d7734a1
2024-08-07 03:59:31 -07:00
Hamish Tomlinson
dbe2a438eb
Update requirements:
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- Ubuntu to 20.04
- Cuda to 12.2.2
- Tensorflow to 2.16.1
- Jax to 0.4.26
- Openmm to 8.0.0
PiperOrigin-RevId: 624094170
Change-Id: I49391c3f721e93ac8ccd5a4483cdb6f2ec61cd3b
2024-04-12 01:57:58 -07:00
Hamish Tomlinson
5208f1b70e
Update jax, haiku and chex versions.
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PiperOrigin-RevId: 623469847
Change-Id: I64a812e00e099f6503b9aa1e0cfde1133ea8a774
2024-04-10 06:04:14 -07:00
Hamish Tomlinson
7c9114c842
Bump jax to 0.4.14 and haiku to 0.0.10.
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PiperOrigin-RevId: 555464931
Change-Id: I382adafe6e7f35960eeffaa1cceeaeb5e08ce87d
2023-08-10 06:28:00 -07:00
Jana Cavojska
6cb85e9684
Update Conda in Colab and fix dependency issues
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PiperOrigin-RevId: 549256996
Change-Id: I1c5fb68a1abe6016a89740cab1e033876c248c56
2023-07-19 02:55:00 -07:00
Augustin Zidek
c1e92dc524
Bump SciPy version from 1.7.0 to 1.7.3 for compatibility with Python 3.10.
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PiperOrigin-RevId: 528849422
Change-Id: I22068400c1cd764be88e34739cbc9992d023fcda
2023-05-02 11:58:26 -07:00
Hamish Tomlinson
fed21ddd04
Update tensorflow
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PiperOrigin-RevId: 503968820
Change-Id: I2ab071d6872bc2f9eaab4a464aed684036b966d2
2023-01-23 06:29:11 -08:00
Hamish Tomlinson
8537f51d30
Updated Jax to 0.3.25 and Haiku to 0.0.9
2022-11-26 09:53:40 +00:00
Hamish Tomlinson
5e702ce125
Update Jax and Haiku versions
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PiperOrigin-RevId: 474776295
Change-Id: I8f5add84f45069f2c48ac905801a611cb298b319
2022-09-16 03:29:31 -07:00
Augustin Zidek
0f7ab1377a
Pin protobuf version to 3.20.1.
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PiperOrigin-RevId: 454545752
Change-Id: I80656e917ee799fbf808002260634d2b1c38dca0
2022-06-13 01:19:18 -07:00
Augustin-Zidek
0be2b30b98
Add code for AlphaFold-Multimer.
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PiperOrigin-RevId: 407076987
2021-11-02 14:33:58 +00:00
Tim Green
b3ed8603e8
Switch to Tensorflow CPU-only. GPU not needed for data pipeline.
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PiperOrigin-RevId: 387576219
Change-Id: Ic735f068df2a3e9f53bed836f172c08f79ac231c
2021-07-29 07:07:05 -07:00
Augustin-Zidek
1109480e6f
Initial release of AlphaFold.
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PiperOrigin-RevId: 384954738
2021-07-15 18:44:37 +01:00
