mirror of
https://github.com/google-deepmind/alphafold.git
synced 2026-06-04 14:58:05 +08:00
83 lines
2.3 KiB
TOML
83 lines
2.3 KiB
TOML
# Copyright 2021 DeepMind Technologies Limited
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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[build-system]
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requires = ["setuptools>=61.0.0,<72.0.0"]
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build-backend = "setuptools.build_meta"
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[project]
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name = "alphafold"
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dynamic = ["version"]
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requires-python = ">=3.10"
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description = "An implementation of the inference pipeline of AlphaFold v2.0. This is a completely new model that was entered as AlphaFold2 in CASP14 and published in Nature."
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authors = [
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{name = "DeepMind", email = "alphafold@deepmind.com"},
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]
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license = {text = "Apache License, Version 2.0"}
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readme = "README.md"
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classifiers = [
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"Development Status :: 5 - Production/Stable",
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"Intended Audience :: Science/Research",
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"License :: OSI Approved :: Apache Software License",
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"Operating System :: POSIX :: Linux",
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"Programming Language :: Python :: 3.10",
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"Programming Language :: Python :: 3.11",
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"Programming Language :: Python :: 3.12",
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"Topic :: Scientific/Engineering :: Artificial Intelligence",
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]
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dependencies = [
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"absl-py==1.0.0",
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"biopython==1.79",
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"dm-haiku==0.0.12",
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"docker==5.0.0",
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"jax==0.4.26",
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"matplotlib==3.8.0",
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"ml-collections==0.1.0",
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"numpy==1.24.3",
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"openmm[cuda12]==8.2.0",
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"pdbfixer==1.12.0",
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"tensorflow-cpu==2.16.1",
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]
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[project.optional-dependencies]
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test = ["pytest<8.5.0"]
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[project.urls]
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Homepage = "https://github.com/deepmind/alphafold"
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[project.scripts]
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run_alphafold = "run_alphafold:main"
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[tool.setuptools.dynamic]
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version = {attr = "alphafold.version.__version__"}
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[tool.setuptools]
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py-modules = ["run_alphafold"]
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[tool.pyink]
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line-length = 80
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unstable = true
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target-version = []
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pyink-indentation = 2
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pyink-use-majority-quotes = true
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pyink-annotation-pragmas = [
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"noqa",
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"pylint:",
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"type: ignore",
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"pytype:",
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"mypy:",
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"pyright:",
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"pyre-",
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]
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