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alphafold/setup.py
Ryan Pachauri e1554305c0 Remove pandas dependency from msa_pairing.py.
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Python

# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Install script for setuptools."""
from alphafold import version
import setuptools
setuptools.setup(
name='alphafold',
version=version.__version__,
description=(
'An implementation of the inference pipeline of AlphaFold v2.0. This is'
' a completely new model that was entered as AlphaFold2 in CASP14 and'
' published in Nature.'
),
author='DeepMind',
author_email='alphafold@deepmind.com',
license='Apache License, Version 2.0',
url='https://github.com/deepmind/alphafold',
packages=setuptools.find_packages(),
scripts=['run_alphafold.py'],
install_requires=[
'absl-py',
'biopython',
'dm-haiku',
'docker',
'jax',
'matplotlib',
'ml-collections',
'numpy',
'pytest',
'scipy',
'tensorflow-cpu',
],
classifiers=[
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: Apache Software License',
'Operating System :: POSIX :: Linux',
'Programming Language :: Python :: 3.8',
'Programming Language :: Python :: 3.9',
'Programming Language :: Python :: 3.10',
'Programming Language :: Python :: 3.11',
'Programming Language :: Python :: 3.12',
'Topic :: Scientific/Engineering :: Artificial Intelligence',
],
)