From 10b18bf70252bf5c882c8d4b0ac9f7d1055d81e0 Mon Sep 17 00:00:00 2001 From: Augustin Zidek Date: Thu, 14 May 2026 08:12:53 -0700 Subject: [PATCH] Fix typing issue in _get_rna_msa revealed by Pyrefly PiperOrigin-RevId: 915437887 Change-Id: I1281fa6ba26ee74c90d68061823b19df38787744 --- src/alphafold3/data/pipeline.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/alphafold3/data/pipeline.py b/src/alphafold3/data/pipeline.py index 51b07ca..f1dfccc 100644 --- a/src/alphafold3/data/pipeline.py +++ b/src/alphafold3/data/pipeline.py @@ -155,9 +155,9 @@ def _get_protein_msa_and_templates( @functools.cache def _get_rna_msa( sequence: str, - nt_rna_msa_config: msa_config.NhmmerConfig, - rfam_msa_config: msa_config.NhmmerConfig, - rnacentral_msa_config: msa_config.NhmmerConfig, + nt_rna_msa_config: msa_config.RunConfig, + rfam_msa_config: msa_config.RunConfig, + rnacentral_msa_config: msa_config.RunConfig, ) -> msa.Msa: """Processes a single RNA chain.""" logging.info('Getting RNA MSAs for sequence %s', sequence)