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  • 4613d0d547 Merge pull request #294 from Electrostatics/dependabot/github_actions/dot-github/workflows/actions/download-artifact-4.1.7 main Nathan Baker 2024-09-07 11:34:55 -07:00
  • eed754fdb0 Bump actions/download-artifact from 2 to 4.1.7 in /.github/workflows dependabot[bot] 2024-09-03 21:16:25 +00:00
  • c2e5af22c9 Merge pull request #263 from Electrostatics/nathan/259b Nathan Baker 2022-12-11 17:25:56 -08:00
  • ceb74d1005 Increase Python version to 3.10. Nathan Baker 2022-12-11 16:54:40 -08:00
  • 2395ebfa9e Update Ubuntu version to 22.04. Nathan Baker 2022-12-11 15:21:17 -08:00
  • 6fe92253f1 Merge pull request #262 from Electrostatics/nathan/261 Nathan Baker 2022-12-11 14:29:49 -08:00
  • abf29bdd8c Remove extraneous /bin/true. Nathan Baker 2022-12-11 11:42:41 -08:00
  • 2439987956 Fix environment problem building METIS. Nathan Baker 2022-12-11 11:38:56 -08:00
  • 00c8fc9037 Remove METIS wget from GitHub actions. Nathan Baker 2022-12-11 07:58:45 -08:00
  • 4e9fd3c868 Point Docker builds to Git version of METIS. Nathan Baker 2022-12-10 20:45:48 -08:00
  • e8d1a9ce9a Merge pull request #251 from Electrostatics/nathan/191 Nathan Baker 2022-10-15 14:05:32 -07:00
  • d0784152db Merge pull request #252 from Electrostatics/nathan/250 Nathan Baker 2022-10-15 13:59:17 -07:00
  • 82ff82a4c2 Remove ChangeLog.md. Nathan Baker 2022-10-15 13:44:51 -07:00
  • cc5752be12 Add Spack configuration files. Nathan Baker 2022-10-15 13:34:31 -07:00
  • f333b9b22c Read the version from the VERSION file for apbs/_version.py nsoblath/issue_234 Noah Oblath 2022-04-29 16:28:42 -07:00
  • 1a3890f681 Update _version.py release Darren Curtis 2022-04-29 14:07:27 -07:00
  • e0c9c308a1 Update _version.py Darren Curtis 2022-04-29 14:05:51 -07:00
  • f24dd7629a New release: v3.4.1 (#232) v3.4.1 Noah Oblath 2022-04-29 11:53:08 -07:00
  • 9d52516947 Updated license, version, and release info for pending release Noah Oblath 2022-04-29 10:23:12 -07:00
  • eb094c9184 Updated installation documentation (#231) Noah Oblath 2022-04-28 17:24:46 -07:00
  • 30abf9c46b Nsoblath/new issue 207: Addressing python version test (#229) Noah Oblath 2022-04-28 16:37:14 -07:00
  • 2eb1b963ef Nsoblath/issue 226: FETK update (#227) Noah Oblath 2022-04-28 10:37:01 -07:00
  • 4afec7cae9 Remove all mention of ENABLE_FETK (#225) Noah Oblath 2022-04-20 14:38:06 -07:00
  • cc76bfb5b6 Nsoblath/issue 222 (#223) Noah Oblath 2022-04-20 10:47:02 -07:00
  • 551c816219 Nsoblath/issue 212 (#217) Noah Oblath 2022-04-13 15:53:57 -07:00
  • 03394d7ac4 Change OS specification in build workflow (#210) Noah Oblath 2022-02-14 13:53:39 -08:00
  • e3deae22ae Fixed syntax errors in checking for max python version (#208) Noah Oblath 2022-02-14 13:45:40 -08:00
  • ed52c8c044 Merge pull request #205 from Electrostatics/main v3.4.0 Noah Oblath 2022-01-24 20:21:37 -08:00
  • 2d2fcfe6c9 Merge branch 'release' Noah Oblath 2022-01-24 19:02:06 -08:00
  • fc7c37cbf4 Fixing package_file name Noah Oblath 2022-01-24 19:01:11 -08:00
  • f2b7fbe8f2 Main (#204) Noah Oblath 2022-01-24 16:16:59 -08:00
  • a6d40d8494 [skip ci] Merge branch 'release' Noah Oblath 2022-01-24 16:15:29 -08:00
  • 67ed0676b2 Change order and spacing of targets Noah Oblath 2022-01-24 16:12:40 -08:00
  • 0c9b63e4c1 Main (#203) Noah Oblath 2022-01-24 16:03:42 -08:00
  • 34dea575e3 Merge branch 'release' Noah Oblath 2022-01-24 15:59:30 -08:00
  • ca877cf26f Change build.yml to build.yaml Noah Oblath 2022-01-24 15:56:39 -08:00
  • f1e231ca4d Add workflow_dispatch trigger Noah Oblath 2022-01-24 15:54:01 -08:00
  • fb6ecf9710 Nsoblath/issue 163 (#171) (#202) Noah Oblath 2022-01-24 15:35:09 -08:00
  • cb112a8577 Nsoblath/issue 163 (#171) master_unused_delete_me_March_2022 Noah Oblath 2022-01-24 15:33:56 -08:00
  • 872a95600b Comment out non-running examples nsoblath/issue_198 Noah Oblath 2022-01-04 08:56:32 -08:00
  • d53af54275 [skip ci] Updated releases.rst Noah Oblath 2022-01-04 08:54:57 -08:00
  • 93a6079eac Updated run_selected_examples.sh with gdb bt of geoflow/glycerol.in example Noah Oblath 2022-01-04 08:45:06 -08:00
  • 57fea74d34 Replace pbsam-auto with pbsam in a couple of examples Noah Oblath 2022-01-04 08:44:26 -08:00
  • b997cf6eaf Update FETK version in the Dockerfile Noah Oblath 2022-01-04 08:43:58 -08:00
  • 10bca7e831 Add metis build to the Dockerfile Noah Oblath 2022-01-04 08:43:43 -08:00
  • 5cb0b67ae0 [skip ci] Updated current status of examples in run_selected_examples.sh. Noah Oblath 2022-01-03 13:52:38 -08:00
  • 91de12f98e Re-enable examples to check current status Noah Oblath 2022-01-03 13:06:59 -08:00
  • 2083997630 Cleanup Noah Oblath 2022-01-03 13:06:36 -08:00
  • 76fe1b61a0 New FETK version Noah Oblath 2022-01-03 12:57:23 -08:00
  • de954f23d8 Added comments on CMake policy choices Noah Oblath 2022-01-03 12:57:13 -08:00
  • 5c431bf404 Remove examples that fail Noah Oblath 2022-01-02 02:18:04 -08:00
  • 99ad4384b4 Retesting with all selected examples enabled Noah Oblath 2022-01-02 01:35:47 -08:00
  • 19207e104b [skip ci] Test skipping the CI process, and also minor docs update Noah Oblath 2022-01-02 01:29:29 -08:00
  • 7689ddcd1f Revert tmate to on failure after build Noah Oblath 2022-01-01 15:35:07 -08:00
  • c6bb2b395e Specify Python architecture Noah Oblath 2022-01-01 15:34:53 -08:00
  • 507b16116b Get tmate in windows after build Noah Oblath 2022-01-01 14:58:21 -08:00
  • a38f28e4ae Try including PYGBE without doing _splitpath Noah Oblath 2021-12-31 02:45:36 -08:00
  • 7cb7648ae8 Some documentation updates Noah Oblath 2021-12-31 02:37:13 -08:00
  • faca16aa72 Fixing the declaration of mol_dirname for the Windows build and re-enabling the use of PYGBE Noah Oblath 2021-12-31 02:02:21 -08:00
  • 2c7d4d2101 Let's see if it's the python linking or the PYGBE-enabled code is causing the Windows use test problem Noah Oblath 2021-12-24 01:02:58 -08:00
  • b0152c8900 Let's see if it's just Python/PYGBE causing problems on the windows build Noah Oblath 2021-12-24 00:17:48 -08:00
  • 7290e59efb Add ldd step for debugging windows use test Noah Oblath 2021-12-23 21:55:27 -08:00
  • c7e746646b Fix python version variable Noah Oblath 2021-12-23 03:10:58 -08:00
  • b7d0fa3d82 Treat version numbers as strings until they're into CMake Noah Oblath 2021-12-23 03:07:03 -08:00
  • 6ddced8889 Min and max python versions Noah Oblath 2021-12-23 02:53:13 -08:00
  • df7c8aa16f Need to specify the python version to CMake Noah Oblath 2021-12-23 02:24:13 -08:00
  • 89b700f613 Fixing the path to the package Noah Oblath 2021-12-22 16:46:13 -08:00
  • 4e0f6eaf68 Use 7z instead of zip/unzip Noah Oblath 2021-12-22 15:22:57 -08:00
  • 70cffd2b5d Need to get rid of the extension Noah Oblath 2021-12-22 15:02:54 -08:00
  • 43d929d329 We shouldn't need the installed prereqs in Windows (libraries should come with the zip file) Noah Oblath 2021-12-22 14:40:40 -08:00
  • a1d643d2c2 Typo Noah Oblath 2021-12-22 14:39:27 -08:00
  • d08141ef5a Attempt at providing a windows equivalent of the use of dirname in main.c Noah Oblath 2021-12-22 14:28:53 -08:00
  • 3e8b6850f8 Fix copying of dlls into the Windows zip package Noah Oblath 2021-12-22 13:28:45 -08:00
  • b616c5112c Enable PYGBE in Windows and add Python to use tests in all builds Noah Oblath 2021-12-22 13:28:25 -08:00
  • 1d621e82fe Remove the link search variables Noah Oblath 2021-12-22 01:17:55 -08:00
  • b8d42b0c83 Need libumfpack for the windows use tests. And use tmate if the build fails. Noah Oblath 2021-12-22 00:51:00 -08:00
  • 6c920a573e Update FETK Noah Oblath 2021-12-21 15:15:56 -08:00
  • 05be5916a6 Debugging messages Noah Oblath 2021-12-21 15:15:38 -08:00
  • 5b0185b842 Verbose build, for now Noah Oblath 2021-12-21 15:15:29 -08:00
  • e713a32ee3 Remove extra line and print umfpack libraries Noah Oblath 2021-12-21 15:14:59 -08:00
  • 72e2ccab45 Update FETK hash Noah Oblath 2021-12-21 13:41:15 -08:00
  • 09f3300868 Adapt to changes in FETK Noah Oblath 2021-12-21 13:41:05 -08:00
  • da4d9674d5 Some anticipation of the types of jobs that will be run Noah Oblath 2021-12-21 11:20:06 -08:00
  • fa815c95dc Run tmate for windows to check linking Noah Oblath 2021-12-21 11:09:00 -08:00
  • d1a5c91a24 Add a global static-build option and set the MSVC runtime library variable to hopefully perform a static build in windows Noah Oblath 2021-12-21 11:07:10 -08:00
  • d0e28b1778 Adding Python for linux Noah Oblath 2021-12-21 09:35:23 -08:00
  • ec4f2ae4c9 Fixing the TABIPB library install location and NanoShaper duplicate install issues. Noah Oblath 2021-12-21 09:35:12 -08:00
  • 379f872ead Sudo make install on linux Noah Oblath 2021-12-20 17:21:02 -08:00
  • 4f916c230a Separate tar and gunzip calls Noah Oblath 2021-12-20 17:10:13 -08:00
  • 4abe90540c Install metis manually on mac and linux to get static libs Noah Oblath 2021-12-20 17:05:19 -08:00
  • 5b3744b914 I think we deleted nanoshaper when we cleared the temp directory, so don't do this Noah Oblath 2021-12-20 16:41:45 -08:00
  • abc1f2aa34 Remove the use of EXECUTABLE_OUTPUT_PATH and LIBRARY_OUTPUT_PATH Noah Oblath 2021-12-20 16:11:47 -08:00
  • af8a8e419b Getting things in the right order Noah Oblath 2021-12-20 16:11:12 -08:00
  • 24585036bb Use GNU standard install directories Noah Oblath 2021-12-20 14:17:16 -08:00
  • 87d3adb5d5 Updating how dependencies are searched for and handled Noah Oblath 2021-12-20 12:23:28 -08:00
  • 4a0690d956 These find modules are now handled by FETK Noah Oblath 2021-12-20 12:23:00 -08:00
  • 2b9312b50c FETK is now treated as a required dependency, much earlier in the build Noah Oblath 2021-12-20 12:21:54 -08:00
  • 37f27f87c1 git-ignore all directories that start with build Noah Oblath 2021-12-20 12:18:06 -08:00
  • 60dfbdb91a Added finding AMD Noah Oblath 2021-12-16 17:58:47 -08:00
  • 9d17cdd6f4 Including some dependencies Noah Oblath 2021-12-16 17:53:01 -08:00