diff --git a/example/antibody_scaffolds/adalimumab.6cr1.yaml b/example/antibody_scaffolds/adalimumab.6cr1.yaml index e2133ec..5bc9671 100644 --- a/example/antibody_scaffolds/adalimumab.6cr1.yaml +++ b/example/antibody_scaffolds/adalimumab.6cr1.yaml @@ -26,6 +26,12 @@ design: res_index: 24..34,50..56,89..97 structure_groups: + - group: + id: B + visibility: 2 + - group: + id: A + visibility: 2 - group: id: B res_index: 26..32,52..57,99..110 diff --git a/example/antibody_scaffolds/belimumab.5y9k.yaml b/example/antibody_scaffolds/belimumab.5y9k.yaml index 9940283..7ce9df1 100644 --- a/example/antibody_scaffolds/belimumab.5y9k.yaml +++ b/example/antibody_scaffolds/belimumab.5y9k.yaml @@ -26,6 +26,12 @@ design: res_index: 23..33,49..55,88..98 structure_groups: + - group: + id: B + visibility: 2 + - group: + id: A + visibility: 2 - group: id: B res_index: 26..32,52..57,99..112 diff --git a/example/antibody_scaffolds/crenezumab.5vzy.yaml b/example/antibody_scaffolds/crenezumab.5vzy.yaml index 1149b92..416ff8a 100644 --- a/example/antibody_scaffolds/crenezumab.5vzy.yaml +++ b/example/antibody_scaffolds/crenezumab.5vzy.yaml @@ -26,6 +26,12 @@ design: res_index: 24..39,55..61,94..102 structure_groups: + - group: + id: A + visibility: 2 + - group: + id: B + visibility: 2 - group: id: A res_index: 26..32,52..57,99..101 diff --git a/example/antibody_scaffolds/dupilumab.6wgb.yaml b/example/antibody_scaffolds/dupilumab.6wgb.yaml index a5dab5c..6e0a33b 100644 --- a/example/antibody_scaffolds/dupilumab.6wgb.yaml +++ b/example/antibody_scaffolds/dupilumab.6wgb.yaml @@ -26,6 +26,12 @@ design: res_index: 24..39,55..61,94..102 structure_groups: + - group: + id: A + visibility: 2 + - group: + id: B + visibility: 2 - group: id: A res_index: 26..32,52..57,99..114 diff --git a/example/antibody_scaffolds/golimumab.5yoy.yaml b/example/antibody_scaffolds/golimumab.5yoy.yaml index 0b6c8a1..80e3500 100644 --- a/example/antibody_scaffolds/golimumab.5yoy.yaml +++ b/example/antibody_scaffolds/golimumab.5yoy.yaml @@ -26,6 +26,12 @@ design: res_index: 27..37,53..59,92..101 structure_groups: + - group: + id: H + visibility: 2 + - group: + id: E + visibility: 2 - group: id: H res_index: 29..35,55..60,102..118 diff --git a/example/antibody_scaffolds/guselkumab.4m6m.yaml b/example/antibody_scaffolds/guselkumab.4m6m.yaml index 0c2a0fb..9386680 100644 --- a/example/antibody_scaffolds/guselkumab.4m6m.yaml +++ b/example/antibody_scaffolds/guselkumab.4m6m.yaml @@ -26,6 +26,12 @@ design: res_index: 23..36,52..58,91..101 structure_groups: + - group: + id: B + visibility: 2 + - group: + id: A + visibility: 2 - group: id: B res_index: 26..32,52..57,99..106 diff --git a/example/antibody_scaffolds/mab1.3h42.yaml b/example/antibody_scaffolds/mab1.3h42.yaml index 3ba3f99..dcfe30a 100644 --- a/example/antibody_scaffolds/mab1.3h42.yaml +++ b/example/antibody_scaffolds/mab1.3h42.yaml @@ -26,6 +26,12 @@ design: res_index: 23..36,52..58,91..101 structure_groups: + - group: + id: D + visibility: 2 + - group: + id: C + visibility: 2 - group: id: D res_index: 26..32,52..57,99..112 diff --git a/example/antibody_scaffolds/necitumumab.6b3s.yaml b/example/antibody_scaffolds/necitumumab.6b3s.yaml index f0c83c3..e9a1aef 100644 --- a/example/antibody_scaffolds/necitumumab.6b3s.yaml +++ b/example/antibody_scaffolds/necitumumab.6b3s.yaml @@ -26,6 +26,12 @@ design: res_index: 24..34,50..56,89..97 structure_groups: + - group: + id: B + visibility: 2 + - group: + id: C + visibility: 2 - group: id: B res_index: 26..34,54..58,100..110 diff --git a/example/antibody_scaffolds/nirsevimab.5udc.yaml b/example/antibody_scaffolds/nirsevimab.5udc.yaml index 59986a8..3feb7f5 100644 --- a/example/antibody_scaffolds/nirsevimab.5udc.yaml +++ b/example/antibody_scaffolds/nirsevimab.5udc.yaml @@ -26,6 +26,12 @@ design: res_index: 24..34,50..56,89..97 structure_groups: + - group: + id: A + visibility: 2 + - group: + id: B + visibility: 2 - group: id: A res_index: 26..32,52..57,99..115 diff --git a/example/antibody_scaffolds/sarilumab.8iow.yaml b/example/antibody_scaffolds/sarilumab.8iow.yaml index a152116..74647e0 100644 --- a/example/antibody_scaffolds/sarilumab.8iow.yaml +++ b/example/antibody_scaffolds/sarilumab.8iow.yaml @@ -26,6 +26,12 @@ design: res_index: 24..34,50..56,89..97 structure_groups: + - group: + id: D + visibility: 2 + - group: + id: C + visibility: 2 - group: id: D res_index: 26..32,52..57,99..105 diff --git a/example/antibody_scaffolds/secukinumab.6wio.yaml b/example/antibody_scaffolds/secukinumab.6wio.yaml index c1113ba..fdf8176 100644 --- a/example/antibody_scaffolds/secukinumab.6wio.yaml +++ b/example/antibody_scaffolds/secukinumab.6wio.yaml @@ -26,6 +26,12 @@ design: res_index: 24..35,51..57,90..98 structure_groups: + - group: + id: A + visibility: 2 + - group: + id: B + visibility: 2 - group: id: A res_index: 26..32,52..57,99..116 diff --git a/example/antibody_scaffolds/tezepelumab.5j13.yaml b/example/antibody_scaffolds/tezepelumab.5j13.yaml index 17934ef..f4901bd 100644 --- a/example/antibody_scaffolds/tezepelumab.5j13.yaml +++ b/example/antibody_scaffolds/tezepelumab.5j13.yaml @@ -26,6 +26,12 @@ design: res_index: 54..64,80..86,119..129 structure_groups: + - group: + id: C + visibility: 2 + - group: + id: B + visibility: 2 - group: id: C res_index: 57..63,83..88,130..142 diff --git a/example/antibody_scaffolds/tralokinumab.5l6y.yaml b/example/antibody_scaffolds/tralokinumab.5l6y.yaml index f65776e..83924f2 100644 --- a/example/antibody_scaffolds/tralokinumab.5l6y.yaml +++ b/example/antibody_scaffolds/tralokinumab.5l6y.yaml @@ -26,6 +26,12 @@ design: res_index: 23..33,49..55,88..98 structure_groups: + - group: + id: B + visibility: 2 + - group: + id: C + visibility: 2 - group: id: B res_index: 26..32,52..57,99..111 diff --git a/example/antibody_scaffolds/ustekinumab.3hmw.yaml b/example/antibody_scaffolds/ustekinumab.3hmw.yaml index a49214e..7ac4913 100644 --- a/example/antibody_scaffolds/ustekinumab.3hmw.yaml +++ b/example/antibody_scaffolds/ustekinumab.3hmw.yaml @@ -26,6 +26,12 @@ design: res_index: 24..34,50..56,89..97 structure_groups: + - group: + id: B + visibility: 2 + - group: + id: A + visibility: 2 - group: id: B res_index: 26..32,52..57,99..108