16 Commits

Author	SHA1	Message	Date
MinGyu Choi	80619ae8c9	add explanations for constraint specification from the file and smiles.	2026-01-06 12:12:32 -05:00
MinGyu Choi	7358f4f018	add specifying covalent bonds to atoms that come from a file. Also supports atom constraints from a smiles	2026-01-05 23:32:23 -05:00
Anton Bushuiev	291c4633b2	Add inverse folding example (https://github.com/HannesStark/boltzgen/issues/31)	2025-12-08 18:57:34 -05:00
Tim O'Donnell	0048752f0b	fix antibody example and docs	2025-12-04 22:39:45 -05:00
Tim O'Donnell	b211389a58	rename	2025-12-04 22:34:51 -05:00
Hannes Stark	bedeaf8c5a	remove old scfv files	2025-12-02 17:21:25 -05:00
Hannes Stark	ecaa5327f2	remove superfluous file. I hope noone started using them yet	2025-12-02 17:16:33 -05:00
Hannes Stark	9aa3769691	fix antibody changes	2025-12-02 17:13:05 -05:00
Hannes Stark	7e8d11d9ed	add scfv and fab scaffolds. Rename nanobody-anything to antibody-anything	2025-12-02 14:08:43 -05:00
Tim O'Donnell	a941e4eb3d	fix antibody scaffolds	2025-11-20 14:23:03 -05:00
Tim O'Donnell	eb201df2ce	Add antibody scaffold examples (very experimental)	2025-11-20 12:10:07 -05:00
Hannes Stark	497d9ece63	fix iiptm	2025-11-17 07:29:08 -05:00
HannesStark	71cf7884a1	add documentation to exmaples. fix design insertions such that more than 1 insertion are now possible. fix 1 indexing in design insertion size specification	2025-11-08 18:31:10 +00:00
HannesStark	d4b8206974	fix several isses	2025-10-31 19:59:19 +00:00
HannesStark	96840e6ab6	fix design_iiptm usage in filtering	2025-10-29 01:43:39 +00:00
HannesStark	ff9964a539	first first commit	2025-10-26 20:27:38 +00:00