OlegPlatonov
ffe2871b05
[Feature] Adjusted homophily and label informativeness ( #6516 )
...
Co-authored-by: rudongyu <ru_dongyu@outlook.com >
2023-12-12 02:29:37 +08:00
rudongyu
bb1f8850e5
[NN] Refactor the Code Structure of GT ( #5100 )
2023-04-14 11:50:14 +08:00
Mufei Li
f00cd6efbd
[Utils] Edge and LINKX homophily measure ( #5382 )
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* Update
* lint
* lint
* r prefix
* CI
* lint
* skip TF
* Update
* edge homophily
* linkx homophily
* format
* skip TF
* fix test
* update
* lint
* lint
* review
* lint
* update
* lint
* update
* CI
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-03-03 16:58:20 +08:00
Mufei Li
fcf5ad5f49
[Utils] Node homophily measure ( #5376 )
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* Update
* lint
* lint
* r prefix
* CI
* lint
* skip TF
* Update
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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal >
2023-02-24 14:26:02 +08:00
ZhenyuLU_Heliodore
5598503aa0
[Transform] Add SVDPE Transform Module ( #5121 )
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* add SVD positional encoding
* modify importing module
* Fixed certain problems
* Change the test unit to a nonsigular one
* Fixed typo and make accord with lintrunner
* added svd_pe into dgl.rst
* Modified dgl.rst
2023-02-08 12:29:03 +08:00
peizhou001
3132da2826
Deprecate ( #4864 )
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rename DGLHeteroGraph to DGLGraph
2022-11-15 10:01:01 +08:00
rudongyu
1d2291943e
[Transform] Add shortest distance ( #4799 )
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* shortest dist
* update
* address issues
* update
* fix indent
* lint
* fix indent
2022-11-06 14:04:14 +08:00
rudongyu
303b150f8c
[Transform] Double Radius Node Labeling ( #4513 )
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* add double radius node labeling
* add doc
* add test
* fix lint issue
* update
* update
* update
* update
* fix lint
2022-10-10 14:15:08 +08:00
peizhou001
62af41c245
[Bug] Enable turn on/off libxsmm at runtime ( #4455 )
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* enable turn on/off libxsmm at runtime by adding a global config and related API
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal >
2022-09-05 17:38:34 +08:00
Vibhu Jawa
9ae117d3cd
[Feature] Add to_cugraph and from_cugraph to DGL ( #4166 )
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* Added to_cugraph and from_cugraph functionality
* fix from_cugraph example
* Addressed Reviews
* Fix linting
* Apply suggestions to docstrings from code review
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu >
* Add API docs and remove `from_cugraph` alias
* move cugraph tests to tests/cugraph/test_basics.py
* remove ununsed imports from test_basics.py
* remove pytest.importorskip as no longer needed
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
2022-07-07 11:52:17 +08:00
ndickson-nvidia
5f04fc2b31
[Doc] Updated transform ops list in dgl.rst (Issue #4087 ) ( #4123 )
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* * Added functions from dgl.transforms.functional that were missing from the list for documentation in dgl.rst
* * Sorted transform ops list in dgl.rst in alphabetical order
Co-authored-by: Xin Yao <xiny@nvidia.com >
2022-06-15 14:52:37 +08:00
Krzysztof Sadowski
4c7bd314b4
[Feature] Radius Graph ( #3829 )
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* radius graph
* remove trailing whitespaces from docs
* disable invalid name for transform func
* disable radius graph module invalid name
* move pylint disable before init
* fix missing nodes from point set
* update docs indexing
* add compute mode as optional param
* radius graph test
* remove trailing whitespaces
* fix precision when comparing tensors
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-03-30 17:23:29 +08:00
rudongyu
290b7c25c2
[Transform] Random Walk Positional Encoding & Laplacian Positional Encoding ( #3869 )
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* [Transform] Random Walk Positional Encoding & Laplacian Positional Encoding
* Update python/dgl/transforms/module.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
* Update python/dgl/transforms/functional.py & python/dgl/transforms/module.py
* update python/dgl/transforms/functional.py
* update doc indexing
* update unit test
* support weighted graphs for random_walk_pe
* change reference
* fix linter errors
* fix datatype compatibility with MXNet & TF
* fix device errors
* fix result precision errors
* change tensorflow abs api
* reboost CI
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2022-03-30 15:59:28 +08:00
Mufei Li
ec64581c96
[Doc] Misc fix for doc ( #3782 )
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* Update nn-pytorch.rst
* Update dgl.data.rst
* Update dgl.rst
2022-02-28 16:03:32 +08:00
Quan (Andy) Gan
d41d07d0f6
[Doc and bugfix] Add docs and user guide and update tutorial for sampling pipeline ( #3774 )
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* huuuuge update
* remove
* lint
* lint
* fix
* what happened to nccl
* update multi-gpu unsupervised graphsage example
* replace most of the dgl.mp.process with torch.mp.spawn
* update if condition for use_uva case
* update user guide
* address comments
* incorporating suggestions from @jermainewang
* oops
* fix tutorial to pass CI
* oops
* fix again
Co-authored-by: Xin Yao <xiny@nvidia.com >
2022-02-28 02:21:51 +08:00
Mufei Li
f46080a4d1
[Feature] k-hop Subgraph Extraction ( #3458 )
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* Update
* Fix
* Fix
* Update
* Update
* Update
* Fix CI
* Fix
* Fix
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix for TF
2021-11-04 15:47:35 +08:00
Rhett-Ying
175f53decf
[Feature] enable edge reorder in dgl.reorder_graph() ( #3113 )
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* [Feature] enable edge reorder in dgl.reorder_graph()
* refine doc string
* refine doc string for dgl.reorder_graph
* refine doc string further
2021-07-12 14:11:46 +08:00
Zihao Ye
c372f0aed6
[doc] Expose dgl.partition APIs ( #3103 )
2021-07-06 12:17:56 +08:00
Minjie Wang
d3e4460b98
[Doc] Add docstring for missing APIs ( #3088 )
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* add docstring for missing API; fix some docstring
* rename apis; address comments
2021-07-05 18:40:07 +08:00
Rhett-Ying
4307fe8895
[Feature] Add dgl.reorder() to re-order graph according to specified … ( #3063 )
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* [Feature] Add dgl.reorder() to re-order graph according to specified strategy
* fix unit test failure for metis reorder
* fix unit test failure on mxnet_cpu
* refine unit test for dgl.reorder
* fix unit test failure on mxnet
* fix array_equal error for mxnet unit test
* fix unit test failure for mxnet
* convert metis output to numpy array explicitly
Co-authored-by: Tong He <hetong007@gmail.com >
2021-06-30 13:29:08 +08:00
Mufei Li
5be937a7fb
[Kernel] Slicing Batched Graphs ( #2965 )
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* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Add files via upload
* Add files via upload
* Add files via upload
* Add files via upload
* Update
* Update
* Add files via upload
* Add files via upload
* Update
* Lint
* Add files via upload
* Lint
* Update
* Update
* Update
* Update
* Update
* Lint Fix
* Lint
Co-authored-by: Ubuntu <ubuntu@ip-172-31-12-161.us-west-2.compute.internal >
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com >
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
2021-06-10 12:07:44 +08:00
Quan (Andy) Gan
657c220de7
[Feature] Python interface for adjacency matrix summation and multiplication ( #2893 )
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* test commit
* fixes
* oops
* add docs
* lint
* why does it say I have a trailing whitespace
* oh ok
* fixes
* why there's an invalid argument error
* address comments
* fix
* address comments
2021-05-17 19:47:02 +08:00
Minjie Wang
8a07ab7737
[Doc] Tutorials re-organization ( #2683 )
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* reorg
* change titles
* rm some stale API doc; minor fix
* fix docs
* add warning
* rm new-tutorial run in ci
* lint
2021-02-20 17:42:45 +08:00
Quan (Andy) Gan
2288098ba6
[Feature] Converting a block to a graph and allow block construction ( #2555 )
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* first commit
* more commit
* fix and docstring
* add to api reference
* address comments
* Update convert.py
2021-01-24 12:44:54 +08:00
Zihao Ye
fa5f4d6aa7
[Doc] Hotfix on docstring of set_batch_num_edges ( #2498 )
2021-01-06 21:45:04 +08:00
Zihao Ye
f960468f50
[feature] APIs for manually set batch_num_nodes and batch_num_edges ( #2430 )
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* wip
* udp
* upd
* fix typo
* lint
* lint
* upd
* upd
* lint
* lint
* upd
* upd
* tftest
* fix
* fallback numpy
* fix tf
* docstring
Co-authored-by: Mufei Li <mufeili1996@gmail.com >
2021-01-04 23:43:58 +08:00
Minjie Wang
f13b9b6212
[Doc] Scan the API docs and make many changes ( #2080 )
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* WIP: api
* dgl.sampling, dgl.data
* dgl.sampling; dgl.dataloading
* sampling packages
* convert
* subgraph
* deprecate
* subgraph APIs
* All docstrings for convert/subgraph/transform
* almost all funcs under dgl namespace
* WIP: DGLGraph
* done graph query
* message passing functions
* lint
* fix merge error
* fix test
* lint
* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-20 23:26:49 +08:00
Mufei Li
be444e52d9
[Doc/Feature] Refactor, doc update and behavior fix for graphs ( #1983 )
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* Update graph
* Fix for dgl.graph
* from_scipy
* Replace canonical_etypes with relations
* from_networkx
* Update for hetero_from_relations
* Roll back the change of canonical_etypes to relations
* heterograph
* bipartite
* Update doc
* Fix lint
* Fix lint
* Fix test cases
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix test
* Fix
* Update
* Use DGLError
* Update
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Fix
* Update
* Update
* Update
* Update
* Update
* Update
* rewrite sanity checks
* delete unnecessary checks
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Update
* Fix
* Update
* Update
* Update
* Fix
* Fix
* Fix
* Update
* Fix
* Update
* Fix
* Fix
* Update
* Fix
* Update
* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com >
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com >
Co-authored-by: Quan Gan <coin2028@hotmail.com >
2020-08-18 04:26:29 +08:00
Quan (Andy) Gan
1f7b219594
[Doc] User guide section 5 and 6 ( #2029 )
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* [Doc] User guide section 5 and 6
* oops
* fix
2020-08-17 09:47:01 +08:00
Jinjing Zhou
de2e608bb3
Update dgl.rst ( #2020 )
2020-08-14 18:18:45 +08:00
Minjie Wang
c2cd6eb22e
[Doc] Reorg doc ( #1989 )
2020-08-10 23:19:03 +08:00
