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peizhou/negative__patch
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31 Commits

Author SHA1 Message Date
peizhou001
56ffb650fe [API Deprecation]Deprecate contrib module (#5114) 2023-01-06 20:16:01 +08:00
Mufei Li
3bd5a9b6d1 [Doc] Fix Doc (#3777) 
* Update

* Update

* Update

* Update
 2022-02-25 17:21:06 +08:00
Mufei Li
6d9433b04f [Transform] [Doc] Rename transform to transforms and update doc (#3765) 
* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix
 2022-02-24 21:28:15 +08:00
Mufei Li
48cbea720e [Transform] Module Interface for Transform (#3636) 
* Update

* Update

* Fix

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Update

* Fix lint

* lint

* Update

* Update

* lint fix

* Fix CI

* Fix

* Fix CI

* Update

* Fix

* Update

* Update

* resolve conflict

* Fix CI

Co-authored-by: Ubuntu <ubuntu@ip-172-31-31-136.us-west-2.compute.internal>
 2022-01-17 17:45:07 +08:00
David Min
b78acd67ce [Doc] Add an official documentation of UnifiedTensor (#3194) 
* Add pytorch-direct version

* remove

* add documentation for UnifiedTensor

* Revert "add documentation for UnifiedTensor"

This reverts commit 63ba42644d.

* add UnifiedTensor documentation

* Update python/dgl/contrib/unified_tensor.py

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

Co-authored-by: shhssdm <shhssdm@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2021-08-02 22:40:51 +08:00
Minjie Wang
f13b9b6212 [Doc] Scan the API docs and make many changes (#2080) 
* WIP: api

* dgl.sampling, dgl.data

* dgl.sampling; dgl.dataloading

* sampling packages

* convert

* subgraph

* deprecate

* subgraph APIs

* All docstrings for convert/subgraph/transform

* almost all funcs under dgl namespace

* WIP: DGLGraph

* done graph query

* message passing functions

* lint

* fix merge error

* fix test

* lint

* fix

Co-authored-by: Quan Gan <coin2028@hotmail.com>
 2020-08-20 23:26:49 +08:00
Da Zheng
75ffc31f76 [Doc] Update the docstring of distributed APIs. (#2025) 
* add doc.

* update DistGraph.

* add DistTensor.

* update DistEmbedding.

* add partition.py

* add sampling.

* fix.

* add graph partition book and create a base class.

* fix test.

* add rst.

* update doc rst.

* update.

* fix.

* fix docs

* update distributed tensor and embeddings.

* add checks.

* update DistGraph.

* update initialization.

* fix graph partition book.

* update graph partition book.

* update partition.

* update partition.

* fix.

* add example code.

* update DistGraph

* Update python/dgl/distributed/dist_context.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_context.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* update initialize.

* update dataloader.

* update distgraph.

* update DistGraph.

* update DistTensor.

* update.

* more updates.

* fix lint.

* add num_nodes and num_edges

Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2020-08-18 11:53:45 -07:00
Quan (Andy) Gan
cd48435206 [Transform] Docstring and subframes (#1962) 
* update knn graph docs

* more docs

* [Doc] transform module docstrings

* remove copy_ndata and copy_edata

* fix

* lint

* fix

* fix

* fix

* clean up docstrings

* fix docstring

* dtype specifications

* addresses comments

* fix

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
 2020-08-13 10:41:43 +08:00
Quan (Andy) Gan
f5eb80d221 [Feature] Edge DataLoader for edge classification & link prediction (#1828) 
* clean commit

* oops forgot the most important files

* use einsum

* copy feature from frontier to block

* Revert "copy feature from frontier to block"

This reverts commit 5224ec963e.

* temp fix

* unit test

* fix

* revert jtnn

* lint

* fix win64

* docstring fixes and doc indexing

* revert einsum in sparse bidecoder

* fix some examples

* lint

* fix due to some tediousness in remove_edges

* addresses comments

* fix

* more jtnn fixes

* fix
 2020-08-11 18:00:58 +08:00
Minjie Wang
c2cd6eb22e [Doc] Reorg doc (#1989) 2020-08-10 23:19:03 +08:00
Zihao Ye
2b8eb5be6f [refactor] Move spmm and sddmm operators to operator module (#1873) 
* upd

* upd

* upd

* upd
 2020-07-28 18:39:12 +08:00
Zihao Ye
bc209bff94 [bugfix] Fix the deterministic of kernel test and add documentation. (#1799) 
* upd

* upd

* upd

* relax

* relax too

* upd
 2020-07-14 04:22:31 +08:00
Quan (Andy) Gan
7ba9cbc63e [Docs] Fix docstrings and documentations (#1420) 
* fix docs of to_block

* fix

* oops

* more fixes
 2020-05-19 13:04:55 +08:00
Zihao Ye
93ac29ce34 [Refactor] Unify DGLGraph, BatchedDGLGraph and DGLSubGraph (#1216) 
* upd

* upd

* upd

* lint

* fix

* fix test

* fix

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd tutorial

* upd

* upd

* fix kg

* upd doc organization

* refresh test

* upd

* refactor doc

* fix lint

Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>
 2020-03-05 18:03:57 +08:00
Minjie Wang
5967d81782 [Doc] Re-organize API docs and tutorials (#1222) 
* reorg tutorials and api docs

* fix
 2020-01-26 21:26:34 +08:00
Mufei Li
ead64de98e [Hetero] Batching/Unbatching DGLHeteroGraph (#1017) 
* Update

* Update

* Update

* Fix

* CI style fix

* CI fix style

* Fix

* Try CI

* Fix test

* Update

* Update

* Update

* Update
 2019-11-26 14:40:50 +08:00
Mufei Li
e2b7f745ca [Hetero] Doc (#892) 
* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* style fixes & undefined name fix

* transpose=False in test
 2019-10-06 20:17:40 +08:00
Mufei Li
189c2c0907 [Model Zoo] Refactor Model Zoo for Chemistry (#839) 
* Update

* Update

* Update

* Update fix

* Update

* Update

* Refactor

* Update

* Update

* Update

* Update

* Update

* Update

* Fix style
 2019-09-07 20:01:09 +08:00
VoVAllen
1e2abc9ae9 [Docs] Adjust doc (#808) 
* fix doc

* poke ci

* poke ci

* upd

* fix doc

* upd

* add title for all nn

* upd
 2019-08-31 00:17:49 +08:00
Da Zheng
463807c511 [Doc] indexing missing docs. (#625) 
* add doc of NodeFlow.

* add missing API in nodeflow.

* add docs and two more API to NodeFlow.

* add more docs.

* fix.

* fix.

* fix.

* add docs for distributed sampler.
 2019-06-10 18:11:36 -07:00
Minjie Wang
a88f351174 [Doc] update doc string (#426) 2019-03-02 14:00:52 -05:00
Minjie Wang
565f0c88fc [WIP] [NN] Refactor NN package (#406) 
* refactor graph conv

* docs & tests

* fix lint

* fix lint

* fix lint

* fix lint script

* fix lint

* Update

* Style fix

* Fix style

* Fix style

* Fix gpu case

* Fix for gpu case

* Hotfix edgesoftmax docs

* Handle repeated features

* Add docstring

* Set default arguments

* Remove dropout from nn.conv

* Fix

* add util fn for renaming

* revert gcn_spmv.py

* mx folder

* fix wierd bug

* fix mx

* fix lint
 2019-02-25 18:41:21 -05:00
Mufei Li
24bbdb745e [Feature] Reversed Graph and Transform Module (#331) 
* reverse a graph

* Reverse a graph

* Fix

* Revert "Fix"

This reverts commit 1728826b4f.

* Fix

* Fix

* Delete vcs.xml

* Delete Project_Default.xml

* Fix

* Fix

* Fix

* Remove outdated test

* Reorg transform and update reverse (#2)

* Reorg transform and update reverse

* Fix doc and test

* Update test

* Resolve conflict

* CI oriented fix

* Remove outdated import

* Fix import

* Fix import

* define __all__ for wildcard imports

* Fix import

* Address circular imports

* Fix

* Fix test case

* Fix

* Fix

* Remove unused import

* Fix

* Fix

* Fix
 2019-01-04 13:51:19 -05:00
Lingfan Yu
274e1082f5 [Doc] API doc string for many components (#245) 
* builtin function docstring

* init docstring

* view docstring

* add init to index and fix

* node /edge feature

* Example -> Examples

* fix func hyperlink

* traversal

* fix

* from/to_networkx docstring

* minor

* fix duplicate label

* comment about tensor framework

* from scipy sparse matrix

* fix format errors
 2018-12-04 17:52:00 -05:00
Gan Quan
5680f8dc13 [DOC] Documentation strings for graph mutation, queries, and subgraphing (#207) 
* docstrings for graph mutation & queries

* [Doc] contrib.sampler. (#200)

* subgraph docs

* updates
 2018-12-02 14:41:25 -05:00
Mufei Li
3a0f86a663 [Doc] data (#198) 
* Fix dataset

* Track data APIs
 2018-11-30 11:40:22 -05:00
Mufei Li
485f6d3abd [Doc] udf (#195) 
* Docstring for udf

* Track udf docs

* Improve

* Improved

* Delete udf.py

* Improve
 2018-11-30 00:38:58 -05:00
Minjie Wang
8ea359d125 [API] Message propagation APIs (#127) 
* add examples in traversal.py

* message propagate methods

* use the new message propagation for tree-lstm

* update to the new name

* update propagate API doc

* update doc

* add propagate utest
 2018-11-09 15:04:57 -05:00
Minjie Wang
7fe6d0c857 [Doc] Refactor API doc (#128) 
* refactor API doc; add markup link in tutorials

* fix readme
 2018-11-08 22:57:16 -05:00
Minjie Wang
1b06998465 doc for batched graph 2018-10-05 15:07:42 -04:00
Minjie Wang
c7b9f06946 Init sphinx doc 2018-10-05 14:57:09 -04:00