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34ae70b57cc4cf3b52ba73c9b6bfadd9ab8d286a
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282 Commits

Author SHA1 Message Date
Rhett Ying
34ae70b57c [DistGB] update documentation (#7201) 2024-03-07 16:29:16 +08:00
Rhett Ying
08ad40a342 [doc] do not display nn.tensorflow and nn.mxnet (#7190) 2024-03-04 14:20:20 +08:00
Muhammed Fatih BALIN
346197c477 [GraphBolt][CUDA] Add gb.index_select and fix example inferencing. (#7051) 2024-02-04 19:56:40 +03:00
Muhammed Fatih BALIN
aad12df6a6 [GraphBolt][CUDA] gb.expand_indptr (#6871) 2024-01-18 04:11:01 -05:00
Rhett Ying
d32a5980ca [doc] update gb utilities (#6881) 2024-01-02 15:45:31 +08:00
Rhett Ying
77bf0ac60c [doc] refine api doc 2023-12-21 17:12:10 +08:00
Rhett Ying
5eafa8737f [doc] fix typo 2023-12-21 17:10:29 +08:00
Ramon Zhou
88833e6f16 [Misc] Delete all the DGLMiniBatch from docs and comments. (#6805) 2023-12-21 16:13:55 +08:00
Rhett Ying
1856147c3c [doc] re-org api doc page (#6742) 2023-12-13 15:33:56 +08:00
Rhett Ying
ebadf056c6 [doc] highlight graphbolt (#6745) 2023-12-13 15:33:38 +08:00
OlegPlatonov
ffe2871b05 [Feature] Adjusted homophily and label informativeness (#6516) 
Co-authored-by: rudongyu <ru_dongyu@outlook.com>
 2023-12-12 02:29:37 +08:00
Rhett Ying
2968c9b247 [GraphBolt] remove SingleProcessDataLoader (#6663) 2023-12-04 08:22:15 +08:00
paoxiaode
32749512f4 [Dataset] Add CIFAR10 MNIST dataset in benchmark-gnn (#6543) 
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-11-14 09:54:08 +08:00
LastWhisper
382a2de73c [GraphBolt] Refactor SampledSubgraph and update the corresponding method. (#6533) 2023-11-08 15:29:56 +08:00
LastWhisper
91fe0c9069 [GraphBolt] Refactor CSCSamplingGraph and update the corresponding method. (#6515) 2023-11-04 03:09:14 +08:00
Rhett Ying
a2a3a91325 [GraphBolt][Doc] update examples and display methods on page (#6426) 2023-10-11 16:41:42 +08:00
Rhett Ying
7d87dcec6a [GraphBolt][Doc] update impl (#6418) 2023-10-11 15:11:37 +08:00
Rhett Ying
3349d34195 [GraphBolt][Doc] update top level APIs (#6415) 2023-10-10 10:49:55 +08:00
paoxiaode
8edcad2d80 [Dataset] Add VOCSuperpixels dataset in LRGB (#6389) 2023-10-08 14:03:27 +08:00
paoxiaode
614401ff06 [Dataset] Add peptides functional dataset in LRGB (#6363) 2023-09-26 10:22:33 +08:00
Rhett Ying
c298223f5d [GraphBolt] add BuiltinDataset into doc page (#6355) 2023-09-20 09:58:39 +08:00
Hongzhi (Steve), Chen
89bed21a21 [Graphbolt] Add more class and ops to graphbolt doc. (#6307) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
 2023-09-11 22:19:21 +08:00
Hongzhi (Steve), Chen
fa3f2f486b [Graphbolt] Introduce graphbolt doc. (#6292) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
 2023-09-07 10:03:47 +08:00
czkkkkkk
46809d2948 [Sparse] Add SparseMatrix.indices in docs. (#6092) 2023-08-03 17:04:13 +08:00
Zhiteng Li
19c7e5afc0 [NN] Add EGT Layer (#6056) 
Co-authored-by: rudongyu <ru_dongyu@outlook.com>
 2023-08-02 14:14:08 +08:00
Jiahang Li
d381f2263d [Dataset] MovieLens (#5567) 
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-17-164.ap-northeast-1.compute.internal>
 2023-06-19 16:48:27 +08:00
OlegPlatonov
921476c8c6 [Dataset] Add heterophilous graphs. (#5853) 
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-06-15 09:14:19 +08:00
czkkkkkk
44bcb3f8d2 [Doc] Cleanup DiagMatrix related definitions. (#5836) 2023-06-08 19:25:23 +08:00
Nick Baker
b0308c8525 [Model] Implemented PGExplainer for Heterogeneous graph (#5739) 
Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
Co-authored-by: Kunal Mukherjee <kunmukh@gmail.com>
 2023-06-07 13:42:36 +08:00
Kunal Mukherjee
484fabdcc1 [Model] Implemented PGExplainer for Homogeneous graph (#5550) 
Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
Co-authored-by: Infinity_X <Infinity_X@sinomo.net>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-05-10 20:31:48 +08:00
paoxiaode
c4c9b830ae [NN] GatedGCNConv (#5654) 2023-05-06 18:20:06 +08:00
Kunal Mukherjee
c0f346e754 [Model] Implemented SubgraphX Explainer for Heterogeneous graph (#5530) 
Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
Co-authored-by: Nick Baker <ndbaker1@outlook.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-04-21 14:05:02 +08:00
czkkkkkk
f41934df87 [Sparse] Add conversion between DGLGraph and SparseMatrix. (#5553) 2023-04-20 18:00:34 +08:00
czkkkkkk
b57c56d9a1 [Sparse] Support broadcasting operators (#5544) 2023-04-15 10:36:12 +08:00
rudongyu
bb1f8850e5 [NN] Refactor the Code Structure of GT (#5100) 2023-04-14 11:50:14 +08:00
schmidt-ju
97286f98d3 [NN] Add EdgeGAT operator (#5282) 
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
 2023-04-09 22:54:49 +08:00
Mufei Li
a244de579c [Dataset] WisconsinDataset (#5520) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-04-04 16:44:26 +08:00
Mufei Li
dd4c74ff32 [Dataset] CornellDataset and TexasDataset (#5513) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-04-03 16:16:37 +08:00
Mufei Li
2b5921e759 [Dataset] Actor (#5511) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-03-31 10:28:50 +08:00
Mufei Li
690f37bbe9 update (#5507) 
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-03-28 19:22:44 +08:00
Mufei Li
9e532e7def [Dataset] Chameleon (#5477) 
* update

* update

* update

* lint

* update

* CI

* lint

* update doc

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-03-23 22:34:00 +08:00
ZhenyuLU_Heliodore
4534650f5f [Dataset] Add ZINC Dataset (#5428) 
* Update dgl.data.rst

* Add files via upload

* Add files via upload

* Add files via upload

* Update zinc.py

* Update dgl.data.rst

* Update test_data.py

* Add files via upload

* Update cluster.py

* Update pattern.py

* Update zinc.py

* Update zinc.py

* Update test_data.py

* lint

* fix

* fix path

* update test on label shape

---------

Co-authored-by: rudongyu <ru_dongyu@outlook.com>
 2023-03-22 18:04:41 +08:00
Gleb Bazhenov
54b4bd0acd [Data] new functional for creating data splits in graph (#5418) 
* new functional for creating data splits in graph

* minor fix in data split implementation

* apply suggestions from code review

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* refactoring + unit tests

* fix test file name

* move imports to the top

* Revert "fix test file name"

This reverts commit 126323e38c.

* remove nccl submodule

* address linter issues

---------

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>
 2023-03-09 18:55:25 +08:00
Guangyu Zhou
178290249e [Dataset] Add PATTERN dataset (#5422) 
* add PATTERN dataset

* fix bug

* fix bugs

* fix issues

* refine according to dongyu's comments

---------

Co-authored-by: BuptTab <gyzhou2000@gmail.com>
Co-authored-by: rudongyu <ru_dongyu@outlook.com>
 2023-03-08 14:08:12 +08:00
Tingyu Wang
bfd411d0d5 [Model] Add dgl.nn.CuGraphGATConv model (#5168) 
* add CuGraphGATConv model

* lintrunner

* update model to reflect changes in make_mfg_csr(), move max_in_degree to forward()

* simplify pytest markers

* fall back to FG option for large fanout

* update error msg

* add feat_drop and activation options

* add residual option

* Update python/dgl/nn/pytorch/conv/cugraph_gatconv.py

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/conv/cugraph_gatconv.py

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* reset res_fc

---------

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-03-04 14:10:06 +08:00
Mufei Li
f00cd6efbd [Utils] Edge and LINKX homophily measure (#5382) 
* Update

* lint

* lint

* r prefix

* CI

* lint

* skip TF

* Update

* edge homophily

* linkx homophily

* format

* skip TF

* fix test

* update

* lint

* lint

* review

* lint

* update

* lint

* update

* CI

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-03-03 16:58:20 +08:00
Zhiteng Li
a53ecd229b [Dataset] Add CLUSTER dataset (#5389) 
* add CLUSTER dataset

* refine according to dongyu's comments

---------

Co-authored-by: rudongyu <ru_dongyu@outlook.com>
 2023-03-01 16:36:12 +08:00
Mufei Li
fcf5ad5f49 [Utils] Node homophily measure (#5376) 
* Update

* lint

* lint

* r prefix

* CI

* lint

* skip TF

* Update

---------

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
 2023-02-24 14:26:02 +08:00
Kunal Mukherjee
45153fc078 [Model] Implemented SubgraphX Explainer for Homogeneous graph (#5315) 
* subgraphx commit

* nits

* newline eof added

* lint fix

* test script updated to use default values

* lint fix

* graphs that are used for test cases are updated to a small graph

* lint formatted

* test paramter adj to complete the test under 20s

* lint fixes

---------

Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
 2023-02-23 12:50:31 +08:00
Tingyu Wang
bcf9923b32 [Model] Add dgl.nn.CuGraphSAGEConv model (#5137) 
* add CuGraphSAGEConv model

* fix lint issues

* update model to reflect changes in make_mfg_csr(), move max_in_degree to forward()

* lintrunner

* allow reset_parameters()

* remove norm option, simplify test

* allow full graph fallback option, add example

* address comments

* address reviews

---------

Co-authored-by: Mufei Li <mufeili1996@gmail.com>
 2023-02-22 13:43:28 +08:00