Quan (Andy) Gan
828e269cf4
[Doc] Fixing KNNGraph docs ( #803 )
2019-08-28 14:52:22 +08:00
xiang song(charlie.song)
e17add5602
[NN] Add MXNet impl for TAGCN module. ( #799 )
...
* upd
* fig edgebatch edges
* add test
* trigger
* Update README.md for pytorch PinSage example.
Add noting that the PinSage model example under
example/pytorch/recommendation only work with Python 3.6+
as its dataset loader depends on stanfordnlp package
which work only with Python 3.6+.
* Provid a frame agnostic API to test nn modules on both CPU and CUDA side.
1. make dgl.nn.xxx frame agnostic
2. make test.backend include dgl.nn modules
3. modify test_edge_softmax of test/mxnet/test_nn.py and
test/pytorch/test_nn.py work on both CPU and GPU
* Fix style
* Delete unused code
* Make agnostic test only related to tests/backend
1. clear all agnostic related code in dgl.nn
2. make test_graph_conv agnostic to cpu/gpu
* Fix code style
* fix
* doc
* Make all test code under tests.mxnet/pytorch.test_nn.py
work on both CPU and GPU.
* Fix syntex
* Remove rand
* Add TAGCN nn.module and example
* Now tagcn can run on CPU.
* Add unitest for TGConv
* Fix style
* For pubmed dataset, using --lr=0.005 can achieve better acc
* Fix style
* Fix some descriptions
* trigger
* Fix doc
* Add nn.TGConv and example
* Fix bug
* Update data in mxnet.tagcn test acc.
* Fix some comments and code
* delete useless code
* Fix namming
* Fix bug
* Fix bug
* Add test code for mxnet TAGCov
* Update some docs
* Fix some code
* Update docs dgl.nn.mxnet
* Update weight init
* Fix
2019-08-28 13:19:17 +08:00
Quan (Andy) Gan
dc19cd5687
[Example] Dynamic Graph CNN on Point Cloud ( #789 )
...
* initial commit
* second commit
* another commit
* change docstring
* migrating to dgl.nn
* fixes
* docs
* lint
* multiple fixes
* doc
2019-08-28 09:21:57 +08:00
Zihao Ye
650f6ee1e0
[NN] Add commonly used GNN models from examples to dgl.nn modules. ( #748 )
...
* gat
* upd
* upd sage
* upd
* upd
* upd
* upd
* upd
* add gmmconv
* upd ggnn
* upd
* upd
* upd
* upd
* add citation examples
* add README
* fix cheb
* improve doc
* formula
* upd
* trigger
* lint
* lint
* upd
* add test for transform
* add test
* check
* upd
* improve doc
* shape check
* upd
* densechebconv, currently not correct (?)
* fix cheb
* fix
* upd
* upd sgc-reddit
* upd
* trigger
2019-08-27 18:21:19 +08:00
Minjie Wang
708765f0a1
[NN] RGCN modules ( #744 )
...
* rgcn module
* support id input
* WIP: model codes
* use faster index select
* dropout
* self loop
* WIP: link prediction
* fix lint
* WIP: docs
* docstring
* docstring
* merge two child classes
* mxnet rgcn module
* fix lint
* fix lint
* fix rename bug
* add uniform edge sampler
* fix fn name
* docstring
* fix mxnet rgcn module
* fix mx rgcn
* enable test on cuda
2019-08-23 16:38:48 -04:00
Zihao Ye
742d79a792
upd ( #741 )
2019-08-06 18:39:05 +08:00
Zihao Ye
5d3f470b72
[Feature] DGL Pooling modules ( #669 )
...
* removal doc
* glob
* upd
* rm knn
* add softmax
* upd
* upd
* add broadcast and s2s
* optimize max_on
* forsaken changes to heterograph
* upd
* upd
* upd
* upd
* upd
* bugfix
* upd
* upd
* upd
* upd
* format upd
* upd format
* upd doc
* upd
* import order
* upd
* rm warnings
* fix
* upd test
* upd
* upd
* fix device
* upd
* upd
* upd
* upd
* remove 1.1
* upd
* trigger
* trigger
* add more tests
* fix device
* upd
* upd
* refactor
* fix?
* fix
* upd docstring
* refactor
* upd
* fix
* upd
* upd
* upd
* fix
* upd docs
* add shape
* refactor & upd doc
* upd doc
* upd
2019-08-06 01:43:25 +08:00
Minjie Wang
fc9d30fae4
[Graph] add local scope function ( #735 )
...
* add local scope function
* fix lint
* fix docstring
* change local_scope to local_var; add context manager
* address comments
2019-08-02 00:11:48 -04:00
Quan (Andy) Gan
e9e587b6cb
[Refactor] C random number generator ( #729 )
...
* rng refactor
* fix bugs
* unit test
* remove setsize
* lint
* fix test
* use explicit instantiation instead of inlining
* stricter test
* use tvm solution
* moved python interface to dgl.random
* lint
* address comments
* make getthreadid an inline function
2019-07-31 17:54:30 +08:00
Minjie Wang
e16e895d53
[Doc] fix some document warnings ( #645 )
...
* fix doc
* fix some format and warnings
* fix
2019-06-11 13:41:41 -04:00
Da Zheng
463807c511
[Doc] indexing missing docs. ( #625 )
...
* add doc of NodeFlow.
* add missing API in nodeflow.
* add docs and two more API to NodeFlow.
* add more docs.
* fix.
* fix.
* fix.
* add docs for distributed sampler.
2019-06-10 18:11:36 -07:00
Minjie Wang
ebbb6296f9
[Doc] doc page for builtin functions ( #642 )
...
* doc page for builtin functions; install from source doc
* upload rst
* update
2019-06-10 18:29:28 -04:00
Mufei Li
fb9dcc51ff
[Feature] Add API to convert graph to bidirected graph ( #598 )
...
* to_bidirected
* to_bidirected
* Fix style
* Fix
* Update
* Fix
* Fix
* Update
* Add examples
2019-06-10 14:02:29 +08:00
HQ
993fd3f94b
[Enhancement] Add DGLGraph.to for PyTorch and MXNet backend ( #600 )
...
* add graph_to
* use backend copy_to
* add test
* fix test
* framework agnostic to() test
* disable pylint complaint
* add examples
* fix docstring
* formatting
* Format
* Update test_to_device.py
2019-06-08 16:21:29 +08:00
Zihao Ye
baa16231f3
[Feature] Remove nodes/edges. ( #599 )
...
* upd
* upd
* reformat
* upd
* upd
* add test
* fix arange
* fix slight bug
* upd
* trigger
* upd docs
* upd
* upd
* upd
* change subgraph to be raw data wrapper
* upd
* fix test
2019-06-08 13:44:36 +08:00
kitaev-chen
a3febc061b
[Model] Add GIN Model ( #471 )
...
* add gin model
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
* convert dataset.py to data_ont_the_fly way and put it into dgl.data module
python code checked
* modified document and reference TUDataset; checked python part and bypass cpp part due to error
* change tensor to numpy in dataset and transform in collate@Dataloader
* Change minor format issue
Change minor format issue
* moved logging; adjusted tqdm etc
2019-04-17 14:57:07 +08:00
VoVAllen
00fc680aae
[Dataset] Add TUDataset ( #473 )
...
* add graph classification dataset
* add node label
* add TUDataset
* Modify to consistent with Qi Huang's implementation
* add docs
* Add docs
* Fix change of environment variable
* Update tu.py
* Update tu.py
* Fix error when add node with np.int64
2019-04-10 09:37:53 -04:00
Zihao Ye
d1d580ecc1
[feature & bugfix] adjacency_matrix_scipy, wrong order of edges in immutable graph. ( #437 )
...
* fix rgcn tutorial
* small fix
* upd
* findedge/s
* upd
* upd
* upd
* upd
* add test
* remove redundancy
* upd
* upd
* upd
* upd
* add edge_subgraph
* explicit cast
* add test immutable subg
* reformat
* reformat
* fix bug
* upd
* hotfix
* subgraph docs
* fix adj mat
* fix edges() order
* add test
* revert
* upd
* fix
* upd
2019-03-12 23:57:13 -04:00
Minjie Wang
a88f351174
[Doc] update doc string ( #426 )
2019-03-02 14:00:52 -05:00
Zihao Ye
dba2a5b628
[Doc] Add DGLSubGraph, and DGLGraph.readonly() interface to docs ( #421 )
...
* fix rgcn tutorial
* small fix
* upd
* findedge/s
* upd
* upd
* upd
* upd
* add test
* remove redundancy
* upd
* upd
* upd
* upd
* add edge_subgraph
* explicit cast
* add test immutable subg
* reformat
* reformat
* fix bug
* upd
* hotfix
* subgraph docs
2019-03-01 10:10:24 -05:00
Minjie Wang
565f0c88fc
[WIP] [NN] Refactor NN package ( #406 )
...
* refactor graph conv
* docs & tests
* fix lint
* fix lint
* fix lint
* fix lint script
* fix lint
* Update
* Style fix
* Fix style
* Fix style
* Fix gpu case
* Fix for gpu case
* Hotfix edgesoftmax docs
* Handle repeated features
* Add docstring
* Set default arguments
* Remove dropout from nn.conv
* Fix
* add util fn for renaming
* revert gcn_spmv.py
* mx folder
* fix wierd bug
* fix mx
* fix lint
2019-02-25 18:41:21 -05:00
VoVAllen
bd9171d6cd
[Doc Fix] Fix group_apply_edges docs display
2019-02-21 00:19:39 +08:00
Hao Zhang
788d8dd4ad
[Model]PPI dataloader and inductive learning script. ( #395 )
...
* Create ppi.py
* Create train_ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Create gat.py
* Update train.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* Update train_ppi.py
* Update ppi.py
* Update train_ppi.py
* update docs and readme
2019-02-17 16:41:30 -05:00
Mufei Li
3cbfc25a32
[Tutorial] Batched Graph Classification ( #360 )
...
* batched_graph_classification
* Fix
* Fix
* update tutorial with new dataset
* Final
* Fix doc for dataset
* small fix
2019-01-25 15:13:52 -05:00
Minjie Wang
abf12fc757
[Data] Synthetic dataset for graph classificaiton ( #364 )
...
* minigc dataset
* more comments
* sphinx
2019-01-25 10:47:47 -05:00
Mufei Li
3a868eb04b
[Feature] Max readout and consecutive labeling for networkx ( #341 )
...
* Max readout and consecutive labeling
* Delete test_readout.py
* Delete test_basics.py
* Test case and fix
* Recover accidentally removed file
* Fix import order
* Fix test case
* Fix
* Fix
* Fix
* Fix
* Fix
* revert
* Fix
* Fix
* Fix
2019-01-10 12:58:05 -05:00
Minjie Wang
3edcaa1ed6
[Doc] small fix on the doc ref ( #337 )
2019-01-04 17:10:42 -05:00
Mufei Li
24bbdb745e
[Feature] Reversed Graph and Transform Module ( #331 )
...
* reverse a graph
* Reverse a graph
* Fix
* Revert "Fix"
This reverts commit 1728826b4f#2 )
* Reorg transform and update reverse
* Fix doc and test
* Update test
* Resolve conflict
* CI oriented fix
* Remove outdated import
* Fix import
* Fix import
* define __all__ for wildcard imports
* Fix import
* Address circular imports
* Fix
* Fix test case
* Fix
* Fix
* Remove unused import
* Fix
* Fix
* Fix
2019-01-04 13:51:19 -05:00
Da Zheng
7aa494b3bc
[Bugfix][Doc] explain the batch dimension in the doc and many fix ( #266 )
...
* add more unit tests for mxnet.
* fix.
* explain the batch dimension.
* update doc.
* disable unit tests on DFS.
* fix graph traversal.
2018-12-06 00:48:57 -05:00
VoVAllen
cd907cddfa
[Tutorial] Add sse tutorial & MXNet Tutorial CI ( #252 )
...
* add sse tutorial
* add mxnet tutorial ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* Fix ci
* Fix ci
* Fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* fix ci
* Fix CI
Fix CI image
* permission fix
* fix a bug in the code.
* small fix
* fix doc
* fix ci
* shorten the iters
* fix
* remove extra file
* add load_backend api to dynamically switch to another backend
* try fix
* fix tutorial
* fix tutorial
* fix bug in tutorial
2018-12-05 16:21:44 -05:00
Lingfan Yu
274e1082f5
[Doc] API doc string for many components ( #245 )
...
* builtin function docstring
* init docstring
* view docstring
* add init to index and fix
* node /edge feature
* Example -> Examples
* fix func hyperlink
* traversal
* fix
* from/to_networkx docstring
* minor
* fix duplicate label
* comment about tensor framework
* from scipy sparse matrix
* fix format errors
2018-12-04 17:52:00 -05:00
Mufei Li
7cca500787
[Doc] Computing with DGLGraph ( #212 )
...
* Docs for graph computing
* Docs for graph computing
* Fix
* WIP
* update the docstring
2018-12-04 16:51:46 -05:00
Gan Quan
5680f8dc13
[DOC] Documentation strings for graph mutation, queries, and subgraphing ( #207 )
...
* docstrings for graph mutation & queries
* [Doc] contrib.sampler. (#200 )
* subgraph docs
* updates
2018-12-02 14:41:25 -05:00
Mufei Li
3a0f86a663
[Doc] data ( #198 )
...
* Fix dataset
* Track data APIs
2018-11-30 11:40:22 -05:00
Mufei Li
485f6d3abd
[Doc] udf ( #195 )
...
* Docstring for udf
* Track udf docs
* Improve
* Improved
* Delete udf.py
* Improve
2018-11-30 00:38:58 -05:00
Mufei Li
8dc6784b12
[Doc] docstring for BatchedDGLGraph + some fix ( #184 )
...
* Update doc
* Update batched_graph.py
* Fix
* Fix
* Fix
* Fix
2018-11-29 09:53:16 -05:00
Gan Quan
d6c80e0cf7
[API] bfs with edges ( #132 )
...
* bfs with edges
* dfs toy test case
* clean up
* style fix
* bugfix
* updating docs for bfs_edges and readouts
2018-11-11 17:19:55 -05:00
Minjie Wang
8ea359d125
[API] Message propagation APIs ( #127 )
...
* add examples in traversal.py
* message propagate methods
* use the new message propagation for tree-lstm
* update to the new name
* update propagate API doc
* update doc
* add propagate utest
2018-11-09 15:04:57 -05:00
Minjie Wang
7fe6d0c857
[Doc] Refactor API doc ( #128 )
...
* refactor API doc; add markup link in tutorials
* fix readme
2018-11-08 22:57:16 -05:00
Minjie Wang
1b06998465
doc for batched graph
2018-10-05 15:07:42 -04:00
Minjie Wang
c7b9f06946
Init sphinx doc
2018-10-05 14:57:09 -04:00
