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Fix inverted filenames
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@@ -53,7 +53,9 @@ def run_gromacs_in_docker(fname: str, out_dir: str, gpu: int = 0):
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else ".".join([bname, src_fname])
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)
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logging.info(f"Copying {src_fname} to {dest_fname} in {out_dir}")
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shutil.copy(os.path.join(tmpdir, fname), os.path.join(out_dir, dest_fname))
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shutil.copy(
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os.path.join(tmpdir, src_fname), os.path.join(out_dir, dest_fname)
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)
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os.chdir(orig_dir) # Restore directory
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