25 Commits

Author	SHA1	Message	Date
Kevin Wu	c17bc360b5	Add sklearn requirement (for MDS)	2023-02-08 10:57:38 -08:00
Kevin Wu	8f01d839ec	Improved detection of huggingface hub id	2022-10-05 13:53:15 -07:00
Kevin Wu	6127f3e37b	Add huggingface_hub dependency	2022-10-05 11:47:26 -07:00
Kevin Wu	32aeb89e3b	Reduce complexity of env	2022-09-30 15:34:22 -07:00
Kevin Wu	e524041f88	Update env name	2022-09-27 13:41:10 -07:00
Kevin Wu	b950b2218a	Update installation instructions	2022-09-11 12:22:13 -07:00
Kevin Wu	0b095dbbda	Remove installation of biopython	2022-09-09 10:50:19 -07:00
Kevin Wu	e32b81e37c	Add biotite dependency	2022-09-07 22:10:29 -07:00
Kevin Wu	818add061d	Add py3dmol dependency	2022-09-07 00:41:03 +00:00
Kevin Wu	85d9b8ee35	Wrapper for TMalign	2022-08-31 11:15:17 -07:00
Kevin Wu	855b2614d1	Add biopython dependency	2022-08-23 02:09:34 +00:00
Kevin Wu	30e8cf427c	Update env yml	2022-08-22 06:06:24 +00:00
Kevin Wu	82d0a4ee6e	env updates	2022-08-18 14:08:03 -07:00
Kevin Wu	b8ee432b8c	Drastically simplify env	2022-08-18 13:54:57 -07:00
Kevin Wu	04d6f83e9d	Add astropy dependency	2022-08-17 18:49:54 +00:00
Kevin Wu	eb4c008789	Add mpl scatter density dependency	2022-08-17 18:41:58 +00:00
Kevin Wu	f432dbaa66	Clean up env	2022-08-17 17:04:49 +00:00
Kevin Wu	e8f658f971	Add GitPython dependency	2022-08-16 00:40:23 +00:00
Kevin Wu	648c5865a7	Update environment yml	2022-08-15 22:00:17 +00:00
Kevin Wu	5c47826015	Add dependency on seaborn	2022-07-12 20:32:48 +00:00
Kevin Wu	28b09059a0	Incorporate pytorch lightning	2022-07-08 17:27:10 +00:00
Kevin Wu	39ae64b696	Add matplotlib dependency	2022-07-07 16:50:26 +00:00
Kevin Wu	9a7a3035d2	Adding transformers dependency	2022-07-05 21:33:56 +00:00
Kevin Wu	e5d9219392	Add dependency on sequence-models	2022-07-02 05:33:49 +00:00
Kevin Wu	54560a74d5	Initial env	2022-07-02 05:31:05 +00:00