Kevin Wu b9706eaf20 Script to add oxygen to backbone

2023-09-05 22:54:54 -07:00

..

add_oxygen_to_backbone.py

Script to add oxygen to backbone

2023-09-05 22:54:54 -07:00

af_make_input_dirs.py

AF stuffs

2022-11-18 12:59:34 -08:00

annot_secondary_structures.py

Ability to write raw counts of ss

2022-11-18 11:59:25 -08:00

baseline_sctm_scores_setup.py

Minor cosmetic updates

2022-10-11 20:46:41 -07:00

hclust_structures.py

Formatting updates

2023-02-08 10:50:33 -08:00

mds_structures.py

Support for reading in pdb2git scores

2023-02-09 21:27:26 -08:00

omegafold_across_gpus.py

Omegafold spread load more evenly across GPUs

2022-11-17 14:10:41 -08:00

partial_noise_reconstruct.py

Also save metadata

2023-02-13 23:40:19 -08:00

pdb_to_residue_proteinmpnn.py

Improved error handling

2023-03-29 10:41:27 -07:00

pdb_to_residues_esm.py

Formatting updates

2022-11-17 10:35:32 -08:00

plot_angles_over_time.py

Allow less verbose labeling

2023-02-07 16:21:45 -08:00

sample_autoregressive.py

Progressbar improvements

2022-11-09 11:09:02 -08:00

sample_plotting_only.py

Updates to Ramachandran plot

2022-09-27 21:54:42 -07:00

sample_random_angles.py

Simple script to generate randomly sampled angles

2022-09-22 10:29:51 -07:00

sample.py

Parallelize writing sampled PDB files

2022-11-16 13:33:44 -08:00

sctm.py

Parallelize computation of seocndary structures

2022-12-16 12:45:56 -08:00

splice_aa_onto_backbone.py

Parallelize aa splicing

2023-03-09 15:55:48 -08:00

tmscore_training.py

More import fixes

2022-09-27 11:43:46 -07:00

train_autoregressive.py

Updates to defaults

2022-11-08 22:03:40 -08:00

train.py

Write out the names of all files used in training splits

2023-03-30 13:51:13 -07:00