diff --git a/configs/inference_engine/rf3.yaml b/configs/inference_engine/rf3.yaml
index 24e8d2f..fc3d2da 100644
--- a/configs/inference_engine/rf3.yaml
+++ b/configs/inference_engine/rf3.yaml
@@ -6,7 +6,7 @@ defaults:
 
 _target_: modelhub.inference_engines.rf3.RF3InferenceEngine
 
-ckpt_path: rf3_latest.pt
+ckpt_path: /software/containers/versions/modelhub_inference/ckpts/rf3_latest.ckpt
 
 # Transform arguments
 n_recycles: 10
diff --git a/src/modelhub/inference_engines/rf3.py b/src/modelhub/inference_engines/rf3.py
index 28cf344..fca5f31 100644
--- a/src/modelhub/inference_engines/rf3.py
+++ b/src/modelhub/inference_engines/rf3.py
@@ -171,7 +171,23 @@ class RF3InferenceEngine(InferenceEngine):
                 "not_atomized": 1e-5,  # No noise (TODO: Make configurable)
             },
             "allowed_chain_types_for_conditioning": None,  # Avoid random conditioning
-            "protein_msa_dirs": [],  # To be consistent with installing on non-IPD clusters
+            "protein_msa_dirs": [
+                {
+                    "dir": "/projects/msa/hhblits",  
+                    "extension": ".a3m.gz",
+                    "directory_depth": 2,
+                },
+                {
+                    "dir": "/projects/msa/mmseqs_gpu",  
+                    "extension": ".a3m.gz",
+                    "directory_depth": 2,
+                },
+                {
+                    "dir": "/projects/msa/lab",  
+                    "extension": ".a3m.gz",
+                    "directory_depth": 2,
+                },
+            ],  # To be consistent with installing on non-IPD clusters
             "rna_msa_dirs": [],  # To be consistent with installing on non-IPD clusters
             "p_give_polymer_ref_conf": 0.0,  # Never randomly give ground truth conformers
             "p_give_non_polymer_ref_conf": 0.0,  # Never randomly give ground truth conformers