From a1f00e6db9eae51197665e96c96fb313920fbc01 Mon Sep 17 00:00:00 2001
From: Aiko Muraishi <aimura@uw.edu>
Date: Thu, 11 Dec 2025 16:59:20 -0800
Subject: [PATCH 1/2] fix: include is_non_loopy=true to the example

---
 models/rfd3/docs/symmetry.md | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/models/rfd3/docs/symmetry.md b/models/rfd3/docs/symmetry.md
index fb4f303..faa0688 100644
--- a/models/rfd3/docs/symmetry.md
+++ b/models/rfd3/docs/symmetry.md
@@ -88,6 +88,7 @@ The tasks that these examples describe are as follows:
         "ligand": "ORO,ZN",
         "unindex": "A250",
         "length": 130,
+        "is_non_loopy": true,
         "select_fixed_atoms": {
             "A250": "OD1,CG"
         }
@@ -101,6 +102,7 @@ The tasks that these examples describe are as follows:
         "ligand": "DXC",
         "unindex": "A16,A40,A100,A103",
         "length": 80,
+        "is_non_loopy": true,
         "select_fixed_atoms": {
             "A16": "OH,CZ,CE1,CE2",
             "A40": "OD2,CG",
@@ -118,11 +120,12 @@ The tasks that these examples describe are as follows:
         "ligand": "HEM",
         "contig": "51,M52,80",
         "length": null,
+        "is_non_loopy": true,
         "select_fixed_atoms": {
             "M52": "CG,SD,CE"
         }
     },
-    "uncond_unsym_C3_6t8h": {
+    "unsym_C3_6t8h": {
         "symmetry": {
             "id": "C3",
             "is_symmetric_motif": true,
@@ -130,7 +133,8 @@ The tasks that these examples describe are as follows:
         },
         "input": "symmetry_examples/6t8h_C3.pdb",
         "contig": "150-150,/0,Y1-11,/0,Z16-25",
-        "length": null
+        "length": null,
+        "is_non_loopy": true
     }
 }
 ```
\ No newline at end of file

From 5f0681976ce538d8dc922c2ff20f246ffe0cfeca Mon Sep 17 00:00:00 2001
From: Aiko Muraishi <aimura@uw.edu>
Date: Thu, 11 Dec 2025 17:32:59 -0800
Subject: [PATCH 2/2] fix: is_non_loopy=true only for unconditional

---
 models/rfd3/docs/symmetry.md | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/models/rfd3/docs/symmetry.md b/models/rfd3/docs/symmetry.md
index faa0688..ac0e3e2 100644
--- a/models/rfd3/docs/symmetry.md
+++ b/models/rfd3/docs/symmetry.md
@@ -43,6 +43,7 @@ The following provides a general overview of the types of symmetry and examples
 {
     "uncond_C15": {
         "length": 100,
+        "is_non_loopy": true,
         "symmetry": {
             "id": "C15"
         }
@@ -57,6 +58,7 @@ The following provides a general overview of the types of symmetry and examples
 {
     "uncond_D4": { 
         "length": 100,
+        "is_non_loopy": true,
         "symmetry": {
             "id": "D4"
         }
@@ -88,7 +90,6 @@ The tasks that these examples describe are as follows:
         "ligand": "ORO,ZN",
         "unindex": "A250",
         "length": 130,
-        "is_non_loopy": true,
         "select_fixed_atoms": {
             "A250": "OD1,CG"
         }
@@ -102,7 +103,6 @@ The tasks that these examples describe are as follows:
         "ligand": "DXC",
         "unindex": "A16,A40,A100,A103",
         "length": 80,
-        "is_non_loopy": true,
         "select_fixed_atoms": {
             "A16": "OH,CZ,CE1,CE2",
             "A40": "OD2,CG",
@@ -120,7 +120,6 @@ The tasks that these examples describe are as follows:
         "ligand": "HEM",
         "contig": "51,M52,80",
         "length": null,
-        "is_non_loopy": true,
         "select_fixed_atoms": {
             "M52": "CG,SD,CE"
         }