Sergey Lyskov
bb97ddfb94
Update author email for Sergey Lyskov ( #228 )
2026-02-25 14:33:29 -08:00
Hope Woods
f4f3597aa8
Upload Dockerfile to examples ( #222 )
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* Upload Dockerfile to examples
* Update Foundry README with Docker information
- There is an image for Foundry on DockerHub
- Example recipe is in `foundry/examples/docker`
---------
Co-authored-by: Rachel Clune <rachel.clune@omsf.io >
2026-02-21 22:40:06 -08:00
Magnus Bauer
94eb95a004
Parallelize rc-foundry install and checkpoint downloads for colab notebook ( #157 )
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load ckpts and foundry in parallel to save time
2026-01-07 16:31:06 -08:00
Rachel Clune
6866d610a9
Added line to all.ipynb to fix KeyError: 'extra' issue
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This is in response to issue 106 (https://github.com/RosettaCommons/foundry/issues/106 )
2025-12-17 08:34:30 -08:00
ncorley
04cb7f2ca6
feat: collab notebook
2025-12-03 09:31:41 -08:00
Rohith Krishna
395737750a
Merge pull request #32 from RosettaCommons/fix/readmes
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Add assets, cleanup READMEs, remove old files
2025-12-03 02:45:31 -08:00
ncorley
97a803d1c4
fix: notebook
2025-12-03 02:37:54 -08:00
ncorley
3106504ae1
fix: notebook
2025-12-03 02:25:06 -08:00
Ubiquinone-dot
7c8a29437b
Add assets, cleanup READMEs, remove old files
2025-12-03 01:50:50 -08:00
Jasper Butcher
94bb987998
Refactor/checkpoint defaults ( #723 )
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* Registry rework
* Update README 12
* Mc
* Add all option correction
2025-12-03 00:34:45 -08:00
Rohith Krishna
d07d003ae2
remove notebook outputs
2025-12-03 00:34:45 -08:00
Nathaniel Corley
050390fd67
Feat/notebook and rf3 confidence refactor ( #713 )
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* chore: ruff
* feat: rf3 confidence, notebook update
2025-12-02 16:26:38 -08:00
Raktim Mitra
152a0911f1
DRAFT: docs for release, soft code hbplus ( #699 )
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* documentation for release draft start
* trajectory.png
* update readme to rf3-lab paths, annotate TODOs
* add input_pdbs, demo.json
* Update README.md example pngs
* tasks pngs
* Update README.md - restructure pngs and application links
* Update README.md mc
* Update README.md add ipynb kernel export instruction
* mpnn all.ipynb
* open and edit tutorial.zip
* Update run_inf_tutorial.sh
* remove outputs
* cleanup
* rename
* soft code hbplus executable
* rename modelforge to foundry (rfd3) README
* fix: enabled running rfd3, mpnn inline
* cleanup
* remove todos, one remaining
* clear outputs
---------
Co-authored-by: Raktim Mitra <raktim@digs>
Co-authored-by: Raktim Mitra <raktim@localhost>
Co-authored-by: Rohith Krishna <rohith@localhost>
Co-authored-by: Raktim Mitra <raktim@digs.ipd.uw.edu >
2025-12-01 18:23:02 -08:00
Jasper Butcher
7c1a77ff0c
Add enzyme example, refactor io ( #688 )
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* Add enzyme example, refactor io
* udpate
2025-11-25 16:45:25 -08:00
jbutch
e419028257
Update example
2025-11-23 22:54:06 -08:00
jbutch
1251f0fcf1
Add non-hydra interface for instantiating model
2025-11-23 22:38:39 -08:00
