5 Commits

Author	SHA1	Message	Date
Jasper Butcher	3dba499b6d	refactor source files for open sourcing (#648) ... * mc * Add base class for inference engine * refactor inference engine * Move constants and components out of rfd3 folder * Fixes to engine * Update with working checkpoint * revert layer utils * Fix more imports * Move alignment, conditiontransitionblock * Update sampler name * mc * More import fixes * make format * Minor fixes * mc * Fix rf3 inference engine * Fix inference sampler * Fix modules * Running inference * Make format * add pre-commit hook * fix: RF3 inference (#670) fix: make rf3 tests in new format * Minor cleanup --------- Co-authored-by: Nathaniel Corley <ncorley@uw.edu>	2025-11-20 16:29:47 -08:00
Tuscan R Thompson	de64112d89	Feat: cyclic inference (#552) ... * feat: inference for cyclic peptides * chore: update README * chore: lint * chore: lint * chore: cleanup if statement	2025-10-24 16:27:42 -07:00
ncorley	bcd3c527cd	fix: updates to support latest Run10 RF3	2025-10-07 13:49:42 -07:00
ncorley	592de5b488	fix: working rf3	2025-10-01 23:52:01 -07:00
ncorley	cbbe4c6a6d	wip: save before letting Claude rip	2025-10-01 12:01:05 -07:00