Raktim Mitra 152a0911f1 DRAFT: docs for release, soft code hbplus (#699) ...

* documentation for release draft start

* trajectory.png

* update readme to rf3-lab paths, annotate TODOs

* add input_pdbs, demo.json

* Update README.md example pngs

* tasks pngs

* Update README.md - restructure pngs and application links

* Update README.md mc

* Update README.md add ipynb kernel export instruction

* mpnn all.ipynb

* open and edit tutorial.zip

* Update run_inf_tutorial.sh

* remove outputs

* cleanup

* rename

* soft code hbplus executable

* rename modelforge to foundry (rfd3) README

* fix: enabled running rfd3, mpnn inline

* cleanup

* remove todos, one remaining

* clear outputs

---------

Co-authored-by: Raktim Mitra <raktim@digs>
Co-authored-by: Raktim Mitra <raktim@localhost>
Co-authored-by: Rohith Krishna <rohith@localhost>
Co-authored-by: Raktim Mitra <raktim@digs.ipd.uw.edu>

2025-12-01 18:23:02 -08:00

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