mirror of
https://github.com/RosettaCommons/foundry.git
synced 2026-06-04 13:24:22 +08:00
5e7b739ed3
* Add initial files * add files * Move projects.aa_design -> rfd3 * Make format * Delete test files * Add configs * Mc * Fixed tests * remove test files
48 lines
1.2 KiB
YAML
48 lines
1.2 KiB
YAML
# @package _global_
|
|
|
|
defaults:
|
|
- ppi
|
|
- ../datasets/val/val_examples/bcov_ppi_easy_medium_with_ori@datasets.val.bcov_ppi_easy_medium.dataset.data
|
|
- _self_
|
|
|
|
name: ppi_hdm
|
|
tags:
|
|
- atom14
|
|
- ppi
|
|
- atom-level-hotspots
|
|
- ${datasets.global_transform_args.central_atom}
|
|
- 07-07-branch
|
|
- sl2-base
|
|
- full-binder-crop
|
|
- crop-size-384
|
|
- diffused-centered
|
|
|
|
datasets: # NOTE: in contrast to the old branch, we're using the full atom14 association scheme here
|
|
diffusion_batch_size_train: 8
|
|
crop_size: 384
|
|
global_transform_args:
|
|
keep_full_binder_in_spatial_crop: True
|
|
max_binder_length: 256
|
|
sigma_perturb: 5 # Such that the ori token isn't fixed too closely
|
|
center_option: diffuse
|
|
meta_conditioning_probabilities:
|
|
add_ppi_hotspots: 0.75
|
|
full_binder_crop: 1.0 # Note that this leaks the sequence length
|
|
train:
|
|
pdb:
|
|
sub_datasets:
|
|
interface:
|
|
dataset:
|
|
transform:
|
|
max_atoms_in_crop: 5000
|
|
|
|
model:
|
|
net:
|
|
inference_sampler:
|
|
center_option: diffuse
|
|
diffusion_module:
|
|
diffusion_atom_encoder:
|
|
c_atom_1d_features: 395
|
|
atom_1d_features:
|
|
is_atom_level_hotspot: 1
|