/*-
 * SPDX-License-Identifier: BSD-2-Clause
 * 
 * Copyright (c) 2026 NKI/AVL, Netherlands Cancer Institute
 * 
 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions are met:
 * 
 * 1. Redistributions of source code must retain the above copyright notice, this
 *    list of conditions and the following disclaimer
 * 2. Redistributions in binary form must reproduce the above copyright notice,
 *    this list of conditions and the following disclaimer in the documentation
 *    and/or other materials provided with the distribution.
 * 
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
 * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
 * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
 * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
 * ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
 * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
 * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
 * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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 * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 */

#define CATCH_CONFIG_RUNNER 1 // NOLINT

#include "test-main.hpp"

#include <cif++/utilities.hpp>
#include <cif++/compound.hpp>

std::filesystem::path gTestDir;

int main(int argc, char *argv[])
{
	gTestDir = std::filesystem::current_path();

	Catch::Session session; // There must be exactly one instance

	// Build a new parser on top of Catch2's
	using namespace Catch::Clara;

	auto cli = session.cli()                               // Get Catch2's command line parser
	           | Opt(gTestDir, "data-dir")                 // bind variable to a new option, with a hint string
	                 ["-D"]["--data-dir"]                  // the option names it will respond to
	           ("The directory containing the data files") // description string for the help output
	           | Opt(cif::VERBOSE, "verbose")["-v"]["--cif-verbose"]("Flag for cif::VERBOSE");

	// Now pass the new composite back to Catch2 so it uses that
	session.cli(cli);

	// Let Catch2 (using Clara) parse the command line
	int returnCode = session.applyCommandLine(argc, argv);
	if (returnCode != 0) // Indicates a command line error
		return returnCode;

	// do this now, avoids the need for installing
	cif::add_file_resource("mmcif_pdbx.dic", gTestDir / ".." / "rsrc" / "mmcif_pdbx.dic");

	// initialize CCD location
	cif::add_file_resource("components.cif", gTestDir / ".." / "rsrc" / "ccd-subset.cif");

	cif::compound_factory::instance().push_dictionary(gTestDir / "HEM.cif");

	return session.run();
}