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Fix Markdown Commands query focus (#1626)

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David Sehnal
2025-08-24 13:18:36 +02:00
committed by GitHub
parent 13cf6613a6
commit b3e1e2900b
4 changed files with 28 additions and 16 deletions
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docs/docs/plugin/managers/markdown-extensions.md
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@@ -23,11 +23,11 @@ Generally, the command should be URL encoded, e.g., `a b` => `a%20b` (in JS, `en
- `focus-refs=ref1,ref2,...` - On click, focuses nodes with the provided refs
- `highlight-refs=ref1,ref2,...` - On mouse over, highlights the provided refs
- `query=...&lang=...&action=highlight,focus&focus-radius=...`
- `query` is an expression (e.g., `resn HEM` when using PyMol syntax)
- (optional) `lang` is one of `mol-script` (default), `pymol`, `vmd`, `jmol`
- (optional) `action` is an array of `highlight` (default), `focus` (multiple actions can be specified)
- (optional) `focus-radius` is extra distance applied when focusing the selection (default is `3`)
- Example: `[HEM](!query%3Dresn%20HEM%26lang%3Dpymol%26action%3Dhighlight%2Cfocus)` highlights or focuses the HEM residue (the command must be URL encoded because it contains spaces and possibly other special characters)
- `query` is an expression (e.g., `resn HEM` when using PyMol syntax)
- (optional) `lang` is one of `mol-script` (default), `pymol`, `vmd`, `jmol`
- (optional) `action` is an array of `highlight` (default), `focus` (multiple actions can be specified)
- (optional) `focus-radius` is extra distance applied when focusing the selection (default is `3`)
- Example: `[HEM](!query=resn%20HEM%26lang=pymol&action=highlight,focus)` highlights or focuses the HEM residue (the query must be URL encoded because it contains spaces and possibly other special characters)
- `play-audio=src`, `toggle-audio[=str]`, `stop-audio`, `pause-audio` - Audio playback support
## Custom Content
@@ -37,11 +37,11 @@ Extends Markdown Image syntax to support expressions of the form `![alt](!c1=v1&
### Built-in Custom Content
- `color-swatch=color` - Renders a box with the provided color
- Color palettes:
- `color-palette-name=name` - Renders a gradient with the provided named color palette (see `mol-util/color/lists.ts` for supported color schemes)
- `color-palette-colors=color1,color2` - Renders a gradient with the provided colors
- `color-palette-width=CCS-value` - Specifies the width of the element, defaults to `150px`
- `color-palette-height=CCS-value` - Specified the height of the element, defaults to `0.5em`
- `color-palette-discrete` - Renders discrete color list instead of interpolating
- `color-palette-name=name` - Renders a gradient with the provided named color palette (see `mol-util/color/lists.ts` for supported color schemes)
- `color-palette-colors=color1,color2` - Renders a gradient with the provided colors
- `color-palette-width=CCS-value` - Specifies the width of the element, defaults to `150px`
- `color-palette-height=CCS-value` - Specified the height of the element, defaults to `0.5em`
- `color-palette-discrete` - Renders discrete color list instead of interpolating
## Example