Files
molstar/docs/mkdocs.yml
David Sehnal 6e4065f779 Interactions extension (#1463)
* move schema based element addressing from MVS to the core library

* proof of concept

* tweak

* initial visual

* tweak

* tweak structureElementLocationToSchemaItem

* show receptor residues as ball and stick

* wip data model

* custom interactions support

* add example

* wip visuals

* covalent links

* tweak

* fix bug

* cache unit features

* Add structureRef to Molecule.Structure.Selections

* optimize compute

* support multi-structure selections

* analyzeTrajectory support

* readme

* tweak

* headers

* docs

* Optimize StructureElementSchema & remove fromLoci conversion (not production ready for now, will be separate PR)

* move schema code to `StructureElement.Schema` and add fromExpression/Query/Schame functions to Loci and Bundle

* improve selection docs

* adjust covalent bond data model

* tweak fromExpression

* fix type

* remove hydrogen reference

* Fix MVS.rowsToExpression
2025-03-17 09:25:18 +01:00

64 lines
2.1 KiB
YAML

site_name: Mol* Developer Documentation
theme:
name: material
# 404 page
static_templates:
- 404.html
# Necessary for search to work properly
include_search_page: false
search_index_only: true
# Default values, taken from mkdocs_theme.yml
language: en
font:
text: Roboto
code: Roboto Mono
favicon: assets/favicon.png
icon:
logo: logo
markdown_extensions:
- pymdownx.highlight
- pymdownx.superfences
- pymdownx.arithmatex:
generic: true
# Scripts for rendering Latex equations (in addition to pymdownx.arithmatex):
extra_javascript:
- https://polyfill.io/v3/polyfill.min.js?features=es6
- https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js
nav:
- 'index.md'
- Plugin:
- Creating Instance: 'plugin/instance.md'
- Examples: plugin/examples.md
- Custom Library: 'plugin/custom-library.md'
- Selections: 'plugin/selections.md'
- Viewer State: 'plugin/viewer-state.md'
- Data State: 'plugin/data-state.md'
- File Formats: 'plugin/file-formats.md'
- CIF Schemas: 'plugin/cif-schemas.md'
- State Transforms:
- Custom Trajectory: 'plugin/transforms/custom-trajectory.md'
- Custom Conformation: 'plugin/transforms/custom-conformation.md'
- Data Access Tools:
- 'data-access-tools/model-server.md'
- Volume Server:
- Overview: 'data-access-tools/volume-server/index.md'
- Examples: 'data-access-tools/volume-server/examples.md'
- How it Works: 'data-access-tools/volume-server/how-it-works.md'
- Data Format: 'data-access-tools/volume-server/response-data-format.md'
- 'data-access-tools/plugin-state-server.md'
- 'data-access-tools/convert-to-bcif.md'
- 'data-access-tools/create-ccd-table.md'
- 'data-access-tools/extract-ccd-ions.md'
- Extensions:
- MolViewSpec: 'extensions/mvs/index.md'
- wwPDB StructConn: 'extensions/struct-conn.md'
- Tunnels: 'extensions/tunnels.md'
- Interactions: 'extensions/interactions.md'
- Misc:
- Interesting PDB entries: misc/interesting-pdb-entries.md
- Exporting component data: exporting-components.md
repo_url: https://github.com/molstar/docs