Commit Graph

4 Commits

Author SHA1 Message Date
Josh Horton
fe5de586ef Merge branch 'main' into cli-partial-charges
# Conflicts:
#	openfecli/commands/plan_rbfe_network.py
#	openfecli/commands/plan_rhfe_network.py
#	openfecli/parameters/__init__.py
#	openfecli/parameters/misc.py
#	openfecli/tests/commands/test_plan_rbfe_network.py
#	openfecli/tests/commands/test_plan_rhfe_network.py
2025-01-30 11:07:09 +00:00
Alyssa Travitz
00445dcf5c add support for one repeat per json (#1076)
* add n_protocol_repeats as cli parameter

* add news item

* update tests

* add docstrings

* adding n_repeats test

* switch test to use full --n-protocol-repeats flag

* updating help msg

* updating news entry

* Update openfecli/parameters/misc.py

Co-authored-by: Irfan Alibay <IAlibay@users.noreply.github.com>

---------

Co-authored-by: Irfan Alibay <IAlibay@users.noreply.github.com>
2025-01-29 14:23:15 -08:00
Josh Horton
c46e7c1e5a add charges to cofactor sdf, fix docs, expose overwrite charges to plan CLI 2025-01-24 11:39:39 +00:00
Josh Horton
8602a39aa6 move ncores cli flag, fix tests, add tests for charge generation 2025-01-20 15:53:43 +00:00