Commit Graph

20 Commits

Author SHA1 Message Date
Mike Henry
e8492ea43c debug script for people to test openmm (#733)
* debug script for people to test openmm

* Added news entry

* added checking which platforms can do mixed p

* fix typo in debug script

* added how to run script

* point to new showcase

* give full path to assests to avoid copying notebooking into build env

* rerun ci

* fix mypy env

* looks like we still need to pin mypy but can relax python

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Co-authored-by: Irfan Alibay <IAlibay@users.noreply.github.com>
2024-05-06 12:57:29 -07:00
Richard Gowers
0a64694fa5 Update fetch results (#779)
* update rbfe_results.tar.gz for new settings schema

* re-enable test_gather tests

* devscript for updating rbfe_results.tar.gz

* cli: gather: rework raw gather to work off protocol_result dict

this allows us to later deduplicate and remove the unit_results key from results dicts

* cli: gather: update expected gather results

current raw results are only one replicate, should probably have multiple repeats to test raw output

* cli: gather: use \t escape code in gather raw test

could instead normalise the whitespace to be more permissive...

* Apply suggestions from code review

Co-authored-by: Mike Henry <11765982+mikemhenry@users.noreply.github.com>

* rerun ci

---------

Co-authored-by: Mike Henry <11765982+mikemhenry@users.noreply.github.com>
2024-03-26 19:08:02 -07:00
richard gowers
7cd609332f devtools: add script to update Settings in data files 2024-02-19 21:30:32 +00:00
hannahbaumann
f26ae6290e merge conflicts 2024-02-14 11:15:41 +01:00
IAlibay
e7edc5ffdc Revert "Revert "temporary halfway point as we fix checkpointing""
This reverts commit 5774daede6.
2024-02-11 12:53:58 +00:00
IAlibay
5774daede6 Revert "temporary halfway point as we fix checkpointing"
This reverts commit 61732ae928.
2024-02-11 12:02:30 +00:00
IAlibay
61732ae928 temporary halfway point as we fix checkpointing 2024-02-10 20:39:24 +00:00
IAlibay
1b455cb410 fix devtools partial charge assignment variation 2024-02-10 00:43:11 +00:00
IAlibay
8b7d34079d Fix devtools for #666 changes 2024-02-08 12:05:50 +00:00
IAlibay
7e268de85c Regenerate results JSON files 2024-02-08 12:05:02 +00:00
richard gowers
cc3e22e9d8 revert changes to gen-serialized-results.py 2024-02-06 00:10:04 +00:00
richard gowers
03c4a1707c shorten AHFE time in dev scripts 2024-02-05 16:52:15 +00:00
richard gowers
55981bb288 document dev scripts for generating jsons 2024-02-05 10:20:01 +00:00
hannahbaumann
a82a679a2a adapt gen-serialized-results for new LambdaSettings 2024-01-31 11:55:40 +01:00
Irfan Alibay
cfcc924de8 Add devtools for json results generation + replace old ones (#691)
* Add devtools for json results generation + replace old ones

* remove extra gzip files
2024-01-29 10:37:03 +00:00
Mike Henry
6014e7e3c6 fix issue with new notebook version (#498) 2023-07-20 11:23:01 -07:00
Mike Henry
3868033611 update installer to use python 3.10 2023-06-20 05:59:22 +01:00
Mike Henry
fa83040b5a Push Apptainer Image to GHCR + Build Installer & Docker Image using Conda-Forge Package (#353)
* see if this can push to ghcr

* fix URI

* don't push docker image

* don't push docker image

* see if this lets us login to ghcr

* we can push to github's container registry directly

* now when we trigger a build, we build the latest version we can discover from the tags

* forgot to remove bit where we install package from source

* use docker ignore to make sure we keep the context as small as we can

* make it explicit we don't push before we test, and make sure we have the same build args for when we do push

* add juypterlab and notebook to docker image

* Apply suggestions from code review
2023-04-25 16:38:58 +00:00
Mike Henry
daa74cbf60 Fix single file installer (#308) 2023-04-17 21:47:52 +00:00
Mike Henry
721abe4c4d Single File Installer (#95) 2022-03-31 05:49:25 +01:00