* add more checks
* make precommit manual
* apply formatting to pyproject.toml
* add TODO
* remove unneeded, add a few more
* add ruff, but turn everything off
* add openfe known first party
* format highest-level files
* first half of openfe protocols
* second half of openfe protocols
* openfe protocols formatting, with alyssa's fmt skips
* add ruff formatter to precommit
* fmt: off all vendored _rfe_utils code
* addressing review comments
* format openfe/utils
* format openfe/setup
* first batch of cli formatting
* second batch of cli formatting
* formatting the rest of openfecli commands
* format openfecli/parameters
* format openfe/storage
* run precommit
* Update openfecli/commands/gather.py
Co-authored-by: Irfan Alibay <IAlibay@users.noreply.github.com>
* update example notebooks branch for v1.7.0 docs changes (#1615)
* bump example notebooks branch
* add ipykernel to env
* roll back to fixing septop branch
* i dont think we want ipykernel
* bump to tmp_fix_docs branch
* point to branch revert-237-v1.7_cookbooks
* point to latest example notebooks release
* remove colab button, point to updated example notebooks, reorg landing page (#1618)
* remove colab button from example notebooks in docs
* point to example notebooks 2025.10.2
* replace 'try' with CLI
---------
Co-authored-by: Irfan Alibay <IAlibay@users.noreply.github.com>
* updates to cli from_json
* replacing dump instances with to_json
* Remove unnecessary imports of JSON_HANDLER
* addressing review
---------
Co-authored-by: Mike Henry <11765982+mikemhenry@users.noreply.github.com>
Co-authored-by: David L. Dotson <dotsdl@gmail.com>
* quickrun should error if a unit errors
* Fix incorrect naming
* steps toward fixing error handling
* I think I'm reasonably happy with this.
* update tests to match new output dict
* cleanup
* Update write_transformation_json.py
Co-authored-by: Richard Gowers <richardjgowers@gmail.com>
