* Modify quickrun to allow resuming
* [pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
* store protocol dag using transformation key
* use assert_click_success
* Update the CLI quickrun help info
* Add userguide documentation on how to use quickrun
* this reference instead?
* fix things a little bit
* update the title
* Update environment.yml
* Update docs/guide/cli/quickrun.rst
Co-authored-by: Alyssa Travitz <31974495+atravitz@users.noreply.github.com>
* update for new name for now
* Update docs/guide/cli/quickrun.rst
Co-authored-by: Alyssa Travitz <31974495+atravitz@users.noreply.github.com>
* update for new changes
* Add to the execution guide instead
* some fixes
* Add `>` where it's a CLI command
* formatting fixes
---------
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Alyssa Travitz <alyssa.travitz@omsf.io>
Co-authored-by: Alyssa Travitz <31974495+atravitz@users.noreply.github.com>
this was very theory-heavy and not suitable as the 2nd/3rd pages in the user guide (running from top to bottom)
instead:
- models/alchemical_networks can live in setup
- models/execution can live in execution
