Josh Horton 909d29ad25 Plain MD restart support (#1884) ...

* split md protocol to setup and simulate, add restart support

* allow for resume in any stage

* add a single run dynamics function

* update restart to only look for checkpoints, split out remaining step logic, update tests

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Co-authored-by: Irfan Alibay <IAlibay@users.noreply.github.com>

2026-04-27 16:04:28 +01:00

..

api

Plain MD restart support (#1884)

2026-04-27 16:04:28 +01:00

cli

add docs for gathering septop and abfe (#1737)

2025-12-08 08:41:26 -08:00

index.rst

make gufe lowercase in docs (#1190)

2025-03-14 09:55:24 -07:00